Variant report

Variant	rs61594679
Chromosome Location	chr8:63910270-63910271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10086603	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10087307	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10093652	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10096151	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100534	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10106587	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10107109	0.83[EUR][1000 genomes]
rs10481209	0.90[ASN][1000 genomes]
rs11786957	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11995525	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929916	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16929920	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16929982	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16930023	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16930077	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2043526	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2736683	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28393982	0.87[ASN][1000 genomes]
rs28687189	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28731434	0.87[ASN][1000 genomes]
rs28760056	0.86[EUR][1000 genomes]
rs4509318	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58167727	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58909118	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61056009	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs719235	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72656522	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72656527	0.86[EUR][1000 genomes]
rs72656534	0.85[EUR][1000 genomes]
rs72658314	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72658324	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72659840	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72659842	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72659846	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7834288	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7838752	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9298073	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv6227	chr8:63892087-63936952	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63906800-63926200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:63909600-63916400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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