Variant report

Variant	rs616195
Chromosome Location	chr6:150730455-150730456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150727670..150730575-chr6:150733392..150736317,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs587968	0.85[ASN][1000 genomes]
rs589890	0.84[ASN][1000 genomes]
rs618914	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs651465	0.85[ASN][1000 genomes]
rs653803	0.84[ASN][1000 genomes]
rs681442	0.84[ASN][1000 genomes]
rs725904	0.81[ASN][1000 genomes]
rs9371441	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022455	chr6:150727247-150755933	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150724800-150731000	Weak transcription	Lung	lung
2	chr6:150725400-150731000	Weak transcription	Right Ventricle	heart
3	chr6:150725400-150733000	Weak transcription	Stomach Mucosa	stomach
4	chr6:150725600-150730600	Weak transcription	NH-A	brain
5	chr6:150725600-150731200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:150727600-150734000	Enhancers	Osteobl	bone
7	chr6:150728400-150732400	Enhancers	Fetal Lung	lung
8	chr6:150728800-150732000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:150729600-150731200	Enhancers	Esophagus	oesophagus
10	chr6:150729800-150731000	Enhancers	NHEK	skin
11	chr6:150729800-150732200	Enhancers	Liver	Liver
12	chr6:150730000-150730600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr6:150730000-150730800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:150730000-150731200	Enhancers	Gastric	stomach
15	chr6:150730000-150731400	Enhancers	Duodenum Mucosa	Duodenum
16	chr6:150730000-150731400	Enhancers	Left Ventricle	heart
17	chr6:150730000-150731400	Enhancers	Pancreas	Pancrea
18	chr6:150730000-150731400	Enhancers	HMEC	breast
19	chr6:150730000-150732200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:150730200-150731400	Enhancers	Fetal Muscle Trunk	muscle
21	chr6:150730200-150731400	Enhancers	Fetal Muscle Leg	muscle
22	chr6:150730200-150731800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:150730200-150732800	Enhancers	Fetal Heart	heart
24	chr6:150730200-150732800	Enhancers	Fetal Kidney	kidney
25	chr6:150730400-150730600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
26	chr6:150730400-150731000	Enhancers	Hela-S3	cervix
27	chr6:150730400-150731200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:150730400-150731200	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr6:150730400-150731200	Enhancers	Stomach Smooth Muscle	stomach
30	chr6:150730400-150731200	Enhancers	Spleen	Spleen
31	chr6:150730400-150731400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:150730400-150731400	Enhancers	Primary B cells from cord blood	blood
33	chr6:150730400-150731400	Enhancers	Right Atrium	heart
34	chr6:150730400-150732000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:150730400-150732000	Enhancers	Adipose Nuclei	Adipose
36	chr6:150730400-150732200	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr6:150730400-150732400	Enhancers	Fetal Stomach	stomach
38	chr6:150730400-150733000	Enhancers	HSMMtube	muscle

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