Variant report

Variant	rs61629446
Chromosome Location	chr8:63917641-63917642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10504360	0.93[ASN][1000 genomes]
rs10504361	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11545078	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985884	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11985904	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11989852	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11990678	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992253	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11993022	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16929879	0.82[ASN][1000 genomes]
rs16930045	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16930060	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16930066	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16930072	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17192653	0.93[ASN][1000 genomes]
rs17194931	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17279320	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17279355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17279558	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902232	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1902233	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1902234	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1902235	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2124294	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2353363	0.98[ASN][1000 genomes]
rs2353364	0.98[ASN][1000 genomes]
rs28387373	0.82[ASN][1000 genomes]
rs2883148	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3780127	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780129	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4395892	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4410897	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4419801	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55800505	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56034470	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56213868	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56339102	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57069084	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57140769	0.82[AFR][1000 genomes]
rs57776226	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58942648	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59169978	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60751452	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60889737	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60897253	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61326296	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61518338	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62508064	0.82[ASN][1000 genomes]
rs62508088	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62508107	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62508108	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62508109	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62508110	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62508111	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62508113	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62508123	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62508154	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62508155	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62508156	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62508157	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62508158	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472063	0.95[ASN][1000 genomes]
rs66790008	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6983219	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6983643	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6983864	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6983896	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6997520	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7015120	0.81[ASN][1000 genomes]
rs7015302	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72656550	0.93[ASN][1000 genomes]
rs72658344	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72658396	0.98[ASN][1000 genomes]
rs72658400	0.98[ASN][1000 genomes]
rs72659813	0.95[ASN][1000 genomes]
rs7834301	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv6227	chr8:63892087-63936952	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs61629446	GGH	cis	Artery Tibial	GTEx
rs61629446	GGH	Cis_1M	lymphoblastoid	RTeQTL
rs61629446	GGH	cis	Skin Sun Exposed Lower leg	GTEx
rs61629446	GGH	cis	Nerve Tibial	GTEx
rs61629446	GGH	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63906800-63926200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:63915600-63919600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr8:63915600-63922200	Weak transcription	Fetal Kidney	kidney
4	chr8:63915800-63920200	Weak transcription	HepG2	liver
5	chr8:63916800-63919800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:63916800-63919800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:63916800-63920400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr8:63916800-63920600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links