Variant report
Variant | rs61646517 |
---|---|
Chromosome Location | chr14:70305038-70305039 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr14:70294846..70296359-chr14:70304278..70306055,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10130729 | 0.88[ASN][1000 genomes] |
rs10131029 | 0.94[ASN][1000 genomes] |
rs10134740 | 0.90[ASN][1000 genomes] |
rs10141725 | 0.94[ASN][1000 genomes] |
rs10148661 | 0.94[ASN][1000 genomes] |
rs10149496 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs11622447 | 0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs11844404 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11844452 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2094272 | 0.94[ASN][1000 genomes] |
rs2332169 | 0.94[ASN][1000 genomes] |
rs4499177 | 0.94[ASN][1000 genomes] |
rs55686787 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs55819213 | 0.92[EUR][1000 genomes] |
rs67364517 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv456336 | chr14:70081956-70574149 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
2 | nsv565007 | chr14:70081956-70574149 | Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
3 | esv3440726 | chr14:70304199-70308597 | Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:70295800-70306400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |