The 2.0 version of rSNPBase

Variant report

Variant rs61646530
Chromosome Location chr2:11376837-11376838
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:11296200-11412600 Weak transcription Aorta Aorta
2 chr2:11296800-11379800 Weak transcription Small Intestine intestine
3 chr2:11297600-11394400 Weak transcription Right Ventricle heart
4 chr2:11310600-11433000 Weak transcription Pancreas Pancrea
5 chr2:11320800-11377000 Strong transcription HepG2 liver
6 chr2:11333400-11386200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr2:11339800-11382600 Weak transcription Esophagus oesophagus
8 chr2:11341600-11384400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr2:11352600-11411200 Weak transcription Thymus Thymus
10 chr2:11352800-11424000 Weak transcription HSMMtube muscle
11 chr2:11354400-11382600 Weak transcription Ovary ovary
12 chr2:11354400-11388000 Weak transcription Placenta Amnion Placenta Amnion
13 chr2:11354600-11423800 Weak transcription Brain Inferior Temporal Lobe brain
14 chr2:11355200-11379800 Weak transcription Psoas Muscle Psoas
15 chr2:11355400-11379800 Weak transcription NHEK skin
16 chr2:11357000-11377400 Weak transcription Brain Germinal Matrix brain
17 chr2:11357800-11379800 Weak transcription HMEC breast
18 chr2:11359000-11382000 Weak transcription Primary hematopoietic stem cells blood
19 chr2:11360400-11396400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr2:11360800-11382800 Weak transcription Spleen Spleen
21 chr2:11361000-11378000 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr2:11361000-11379600 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr2:11361000-11380000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr2:11361000-11380200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr2:11361000-11382000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr2:11361000-11383800 Weak transcription Fetal Kidney kidney
27 chr2:11361000-11397000 Weak transcription Fetal Muscle Trunk muscle
28 chr2:11361000-11397400 Weak transcription Left Ventricle heart
29 chr2:11361000-11399200 Weak transcription Primary neutrophils fromperipheralblood blood
30 chr2:11361000-11400200 Weak transcription Gastric stomach
31 chr2:11361000-11410800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
32 chr2:11361000-11411200 Weak transcription Fetal Thymus thymus
33 chr2:11361000-11416600 Weak transcription Primary T regulatory cells fromperipheralblood blood
34 chr2:11361200-11378200 Weak transcription NH-A brain
35 chr2:11361200-11425600 Weak transcription Stomach Smooth Muscle stomach
36 chr2:11361600-11380000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr2:11361600-11380000 Weak transcription Fetal Adrenal Gland Adrenal Gland
38 chr2:11361600-11396800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr2:11364000-11387000 Weak transcription Primary T helper cells fromperipheralblood blood
40 chr2:11364400-11382400 Weak transcription Adipose Nuclei Adipose
41 chr2:11364400-11387600 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr2:11364400-11423800 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr2:11364600-11381600 Weak transcription Breast Myoepithelial Primary Cells Breast
44 chr2:11364800-11397400 Weak transcription Primary T cells fromperipheralblood blood
45 chr2:11365200-11379800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr2:11365400-11387400 Weak transcription HUES64 Cell Line embryonic stem cell
47 chr2:11365600-11383400 Weak transcription Primary monocytes fromperipheralblood blood
48 chr2:11366000-11382800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
49 chr2:11366000-11391000 Weak transcription HUES6 Cell Line embryonic stem cell
50 chr2:11366400-11379800 Weak transcription HSMM muscle

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Last update: Aug 31, 2015