Variant report

Variant	rs61654094
Chromosome Location	chr9:15115730-15115731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15114564..15116499-chr9:15140559..15143275,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10125248	1.00[AMR][1000 genomes]
rs10481555	1.00[AMR][1000 genomes]
rs10810349	1.00[AMR][1000 genomes]
rs12003018	1.00[AMR][1000 genomes]
rs12003600	1.00[AMR][1000 genomes]
rs1746334	1.00[AMR][1000 genomes]
rs1746335	1.00[AMR][1000 genomes]
rs1746336	1.00[AMR][1000 genomes]
rs1746337	1.00[AMR][1000 genomes]
rs1780151	1.00[AMR][1000 genomes]
rs2154152	1.00[AMR][1000 genomes]
rs2186026	1.00[AMR][1000 genomes]
rs2761105	1.00[AMR][1000 genomes]
rs2761116	1.00[AMR][1000 genomes]
rs2761118	1.00[AMR][1000 genomes]
rs2761120	1.00[AMR][1000 genomes]
rs2761122	1.00[AMR][1000 genomes]
rs2761123	1.00[AMR][1000 genomes]
rs2761124	1.00[AMR][1000 genomes]
rs2761125	1.00[AMR][1000 genomes]
rs2761126	1.00[AMR][1000 genomes]
rs2800598	1.00[AMR][1000 genomes]
rs2800600	1.00[AMR][1000 genomes]
rs2800601	1.00[AMR][1000 genomes]
rs2800602	1.00[AMR][1000 genomes]
rs2985032	1.00[AMR][1000 genomes]
rs2985033	1.00[AMR][1000 genomes]
rs2985034	1.00[AMR][1000 genomes]
rs2996633	1.00[AMR][1000 genomes]
rs2996634	1.00[AMR][1000 genomes]
rs4323567	1.00[AMR][1000 genomes]
rs4481708	1.00[AMR][1000 genomes]
rs4507866	1.00[AMR][1000 genomes]
rs4526462	1.00[AMR][1000 genomes]
rs4548273	1.00[AMR][1000 genomes]
rs56108794	1.00[AMR][1000 genomes]
rs563302	1.00[AMR][1000 genomes]
rs56920820	1.00[AMR][1000 genomes]
rs57043384	1.00[AMR][1000 genomes]
rs57232665	1.00[AMR][1000 genomes]
rs58206501	1.00[AMR][1000 genomes]
rs59429561	1.00[AMR][1000 genomes]
rs59503078	1.00[AMR][1000 genomes]
rs60302774	1.00[AMR][1000 genomes]
rs6474896	1.00[AMR][1000 genomes]
rs7018941	1.00[AMR][1000 genomes]
rs7028472	1.00[AMR][1000 genomes]
rs7032041	1.00[AMR][1000 genomes]
rs7032396	1.00[AMR][1000 genomes]
rs7041016	1.00[AMR][1000 genomes]
rs73646014	1.00[AMR][1000 genomes]
rs7853803	1.00[AMR][1000 genomes]
rs9406494	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv892623	chr9:15079847-15127129	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15108200-15115800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:15114600-15116200	Enhancers	Fetal Stomach	stomach
3	chr9:15114600-15121200	Enhancers	Thymus	Thymus
4	chr9:15114800-15115800	Enhancers	Fetal Muscle Leg	muscle
5	chr9:15115000-15116000	Enhancers	Fetal Lung	lung
6	chr9:15115000-15116200	Enhancers	Psoas Muscle	Psoas
7	chr9:15115000-15124400	Enhancers	Fetal Thymus	thymus
8	chr9:15115200-15118000	Enhancers	Fetal Heart	heart
9	chr9:15115600-15116000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr9:15115600-15116400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:15115600-15116400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr9:15115600-15116400	Enhancers	Fetal Kidney	kidney
13	chr9:15115600-15116600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:15115600-15116600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr9:15115600-15116600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr9:15115600-15116800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr9:15115600-15116800	Enhancers	HUES64 Cell Line	embryonic stem cell

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