Variant report

Variant	rs61655655
Chromosome Location	chr2:182640344-182640345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182637961..182640711-chr2:182640767..182642873,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13428784	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1441161	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16867497	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2033965	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7572564	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7586410	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1001558	chr2:182590009-182732738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182636400-182645800	Weak transcription	Pancreas	Pancrea
2	chr2:182636600-182640600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:182638600-182643400	Weak transcription	Placenta	Placenta
4	chr2:182639200-182644000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:182639600-182641200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:182639600-182643400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:182639800-182643200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:182640000-182642200	Weak transcription	NHEK	skin
9	chr2:182640000-182642400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:182640000-182642400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:182640000-182642600	Weak transcription	HMEC	breast
12	chr2:182640000-182643000	Weak transcription	Osteobl	bone
13	chr2:182640000-182643200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:182640000-182643400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:182640000-182643400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr2:182640000-182643400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:182640000-182643400	Weak transcription	NHDF-Ad	bronchial
18	chr2:182640000-182644400	Weak transcription	HSMM	muscle
19	chr2:182640000-182644400	Weak transcription	HSMMtube	muscle
20	chr2:182640000-182645000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr2:182640200-182640600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr2:182640200-182642200	Weak transcription	Hela-S3	cervix
23	chr2:182640200-182644800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links