Variant report

Variant	rs61657263
Chromosome Location	chr20:24112117-24112118
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1005527	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1012783	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1123671	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11696686	0.83[EUR][1000 genomes]
rs11697353	0.91[ASN][1000 genomes]
rs11699743	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480224	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17249809	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1884519	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2070275	0.81[ASN][1000 genomes]
rs2103922	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35663453	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55921601	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6132695	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6132696	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6138201	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6138207	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6138210	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6138214	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24110000-24112400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr20:24110800-24113400	Enhancers	Fetal Kidney	kidney
3	chr20:24111000-24112200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr20:24111000-24117200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr20:24111400-24117200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr20:24111400-24120400	Enhancers	Placenta	Placenta
7	chr20:24111600-24115800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr20:24111600-24119600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr20:24111800-24112600	Enhancers	NHEK	skin
10	chr20:24111800-24113000	Enhancers	HUVEC	blood vessel
11	chr20:24111800-24115600	Enhancers	HMEC	breast
12	chr20:24111800-24116400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr20:24112000-24112200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr20:24112000-24113000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr20:24112000-24113000	Enhancers	Esophagus	oesophagus
16	chr20:24112000-24115000	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links