Variant report

Variant	rs61661904
Chromosome Location	chr13:110827395-110827396
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110826571..110829024-chr13:110829639..110833128,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11841329	1.00[EUR][1000 genomes]
rs16975290	1.00[EUR][1000 genomes]
rs521699	1.00[EUR][1000 genomes]
rs56294719	1.00[EUR][1000 genomes]
rs57652802	1.00[EUR][1000 genomes]
rs58702949	1.00[EUR][1000 genomes]
rs58824458	1.00[EUR][1000 genomes]
rs60015252	1.00[EUR][1000 genomes]
rs60279490	1.00[EUR][1000 genomes]
rs626680	1.00[EUR][1000 genomes]
rs645511	1.00[EUR][1000 genomes]
rs666338	1.00[EUR][1000 genomes]
rs7319834	1.00[EUR][1000 genomes]
rs7320392	1.00[EUR][1000 genomes]
rs7326006	1.00[EUR][1000 genomes]
rs7332823	1.00[EUR][1000 genomes]
rs7333839	1.00[EUR][1000 genomes]
rs7333840	1.00[EUR][1000 genomes]
rs7337040	1.00[EUR][1000 genomes]
rs73611449	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73624503	1.00[EUR][1000 genomes]
rs73624510	1.00[EUR][1000 genomes]
rs73624516	1.00[EUR][1000 genomes]
rs73624520	1.00[EUR][1000 genomes]
rs73624531	1.00[EUR][1000 genomes]
rs7982267	1.00[EUR][1000 genomes]
rs7983033	1.00[EUR][1000 genomes]
rs7984919	1.00[EUR][1000 genomes]
rs7992629	1.00[EUR][1000 genomes]
rs7992797	1.00[EUR][1000 genomes]
rs8000352	1.00[EUR][1000 genomes]
rs9301428	1.00[EUR][1000 genomes]
rs9301430	1.00[EUR][1000 genomes]
rs9583454	1.00[EUR][1000 genomes]
rs9583455	1.00[EUR][1000 genomes]
rs9583456	1.00[EUR][1000 genomes]
rs9583457	1.00[EUR][1000 genomes]
rs9583462	1.00[EUR][1000 genomes]
rs9588062	1.00[EUR][1000 genomes]
rs9588085	1.00[EUR][1000 genomes]
rs9588086	1.00[EUR][1000 genomes]
rs9588087	1.00[EUR][1000 genomes]
rs9588099	1.00[EUR][1000 genomes]
rs9588106	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1045170	chr13:110815422-110836716	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv456116	chr13:110818598-110856153	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv563101	chr13:110818598-110856153	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110791400-110868400	Weak transcription	Psoas Muscle	Psoas
2	chr13:110798800-110853200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr13:110799600-110840200	Strong transcription	Duodenum Smooth Muscle	Duodenum
4	chr13:110800200-110837800	Strong transcription	NH-A	brain
5	chr13:110800600-110834200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr13:110802400-110842800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr13:110803000-110834200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:110803000-110840400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:110803200-110839800	Weak transcription	NHDF-Ad	bronchial
10	chr13:110803200-110839800	Strong transcription	Osteobl	bone
11	chr13:110803600-110840000	Strong transcription	Muscle Satellite Cultured Cells	--
12	chr13:110806600-110860400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr13:110809200-110840000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:110809600-110828000	Weak transcription	Fetal Brain Male	brain
15	chr13:110809800-110831200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr13:110810200-110866400	Strong transcription	Stomach Smooth Muscle	stomach
17	chr13:110811000-110840200	Strong transcription	HUVEC	blood vessel
18	chr13:110811600-110830600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:110811800-110838800	Strong transcription	Right Ventricle	heart
20	chr13:110812000-110838800	Strong transcription	Left Ventricle	heart
21	chr13:110814200-110830200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr13:110816200-110840400	Strong transcription	Adipose Nuclei	Adipose
23	chr13:110820600-110832200	Strong transcription	HSMMtube	muscle
24	chr13:110821000-110839400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr13:110821200-110831000	Strong transcription	NHLF	lung
26	chr13:110821200-110831200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr13:110822000-110839800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr13:110822200-110840000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr13:110822200-110840200	Strong transcription	Colon Smooth Muscle	Colon
30	chr13:110822600-110831800	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr13:110822600-110832000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr13:110822800-110837800	Strong transcription	HSMM	muscle
33	chr13:110823000-110829200	Strong transcription	NHEK	skin
34	chr13:110823000-110831400	Strong transcription	HMEC	breast
35	chr13:110823000-110831800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr13:110823000-110837000	Strong transcription	Rectal Smooth Muscle	rectum
37	chr13:110823000-110840000	Strong transcription	Fetal Lung	lung
38	chr13:110823200-110831000	Strong transcription	Fetal Kidney	kidney
39	chr13:110823400-110831200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr13:110824000-110827600	ZNF genes & repeats	Liver	Liver
41	chr13:110824000-110831000	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr13:110824000-110831000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr13:110824400-110827600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
44	chr13:110824400-110829600	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr13:110824400-110830000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr13:110824400-110830400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr13:110824400-110831600	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr13:110824600-110835800	Strong transcription	Placenta	Placenta
49	chr13:110824600-110836200	Strong transcription	Fetal Muscle Trunk	muscle
50	chr13:110824800-110830800	Strong transcription	Skeletal Muscle Female	skeletal muscle

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