Variant report

Variant	rs61661961
Chromosome Location	chr19:42948573-42948574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr19:42947826-42948637	HepG2	liver:	n/a	n/a
2	MYBL2	chr19:42947917-42948630	HepG2	liver:	n/a	n/a
3	MYBL2	chr19:42947895-42948574	HepG2	liver:	n/a	n/a
4	HEY1	chr19:42947809-42948698	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
CXCL17	TF binding region

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10518265	1.00[EUR][1000 genomes]
rs16975748	1.00[EUR][1000 genomes]
rs16975813	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975816	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975848	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975958	1.00[EUR][1000 genomes]
rs1903724	1.00[EUR][1000 genomes]
rs34044249	1.00[EUR][1000 genomes]
rs34097578	1.00[EUR][1000 genomes]
rs34147019	1.00[EUR][1000 genomes]
rs34366776	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34381435	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34637823	1.00[EUR][1000 genomes]
rs34734442	1.00[EUR][1000 genomes]
rs34760209	1.00[EUR][1000 genomes]
rs34923099	1.00[EUR][1000 genomes]
rs35002034	1.00[EUR][1000 genomes]
rs35038065	1.00[EUR][1000 genomes]
rs35135831	1.00[EUR][1000 genomes]
rs35213872	1.00[EUR][1000 genomes]
rs35266309	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35312827	1.00[EUR][1000 genomes]
rs35349390	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35544765	1.00[EUR][1000 genomes]
rs35855384	1.00[EUR][1000 genomes]
rs35917849	1.00[EUR][1000 genomes]
rs35969273	1.00[EUR][1000 genomes]
rs3745238	1.00[EUR][1000 genomes]
rs4635443	1.00[EUR][1000 genomes]
rs55697425	1.00[EUR][1000 genomes]
rs56271304	1.00[EUR][1000 genomes]
rs56312460	1.00[EUR][1000 genomes]
rs57516100	1.00[EUR][1000 genomes]
rs58405647	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58845793	1.00[EUR][1000 genomes]
rs59983776	1.00[EUR][1000 genomes]
rs60389892	1.00[EUR][1000 genomes]
rs60993923	1.00[EUR][1000 genomes]
rs7253354	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932713	1.00[EUR][1000 genomes]
rs73932727	1.00[EUR][1000 genomes]
rs73932730	1.00[EUR][1000 genomes]
rs73932732	1.00[EUR][1000 genomes]
rs73932734	1.00[EUR][1000 genomes]
rs73932736	1.00[EUR][1000 genomes]
rs73932737	1.00[EUR][1000 genomes]
rs73932738	1.00[EUR][1000 genomes]
rs73932739	1.00[EUR][1000 genomes]
rs73932741	1.00[EUR][1000 genomes]
rs73932742	1.00[EUR][1000 genomes]
rs73932744	1.00[EUR][1000 genomes]
rs73932746	1.00[EUR][1000 genomes]
rs73932747	1.00[EUR][1000 genomes]
rs73932748	1.00[EUR][1000 genomes]
rs73932750	1.00[EUR][1000 genomes]
rs73932751	1.00[EUR][1000 genomes]
rs73932752	1.00[EUR][1000 genomes]
rs73932754	1.00[EUR][1000 genomes]
rs73932761	1.00[EUR][1000 genomes]
rs73932762	1.00[EUR][1000 genomes]
rs73936020	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73936024	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73936031	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73936032	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8105476	1.00[EUR][1000 genomes]
rs8109269	1.00[EUR][1000 genomes]
rs8110316	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42938000-42950200	Weak transcription	Gastric	stomach
2	chr19:42938000-42954200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr19:42945800-42950200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr19:42946200-42953600	Weak transcription	Adipose Nuclei	Adipose
5	chr19:42946400-42949000	Enhancers	Fetal Intestine Large	intestine
6	chr19:42946800-42948600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr19:42946800-42949000	Enhancers	Fetal Intestine Small	intestine
8	chr19:42946800-42949000	Enhancers	A549	lung
9	chr19:42946800-42949200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr19:42947000-42948600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr19:42947000-42949000	Enhancers	Liver	Liver
12	chr19:42947000-42952800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr19:42947000-42952800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr19:42947000-42952800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr19:42947200-42950200	Weak transcription	Lung	lung
16	chr19:42947200-42950400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr19:42947200-42952200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr19:42947200-42953200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr19:42947200-42954400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr19:42947200-42954400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr19:42947200-42954400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr19:42947400-42949000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr19:42947600-42950400	Enhancers	Stomach Mucosa	stomach
24	chr19:42948000-42948600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr19:42948000-42948600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr19:42948000-42949000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr19:42948000-42949000	Flanking Active TSS	HepG2	liver
28	chr19:42948200-42948600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr19:42948200-42948600	Enhancers	Colonic Mucosa	Colon
30	chr19:42948200-42948600	Enhancers	Duodenum Mucosa	Duodenum
31	chr19:42948200-42948600	Enhancers	Fetal Lung	lung
32	chr19:42948200-42949000	Enhancers	Pancreas	Pancrea
33	chr19:42948200-42950400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr19:42948200-42951800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr19:42948200-42953000	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr19:42948200-42956800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr19:42948400-42948600	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr19:42948400-42948600	Enhancers	Small Intestine	intestine
39	chr19:42948400-42949000	Enhancers	Esophagus	oesophagus

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