Variant report

Variant	rs61675340
Chromosome Location	chr5:92240110-92240111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17082555	1.00[EUR][1000 genomes]
rs56715581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59258692	1.00[EUR][1000 genomes]
rs59369031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60126216	1.00[EUR][1000 genomes]
rs6557060	1.00[EUR][1000 genomes]
rs6898957	1.00[EUR][1000 genomes]
rs73140852	1.00[EUR][1000 genomes]
rs73140856	1.00[EUR][1000 genomes]
rs73140858	1.00[EUR][1000 genomes]
rs73140859	1.00[EUR][1000 genomes]
rs73140863	1.00[EUR][1000 genomes]
rs73140864	1.00[EUR][1000 genomes]
rs73140868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73140899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73140901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73142810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73142812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73142822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73144863	1.00[EUR][1000 genomes]
rs7736450	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830398	chr5:92102826-92281331	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv823129	chr5:92222972-92280793	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92238200-92243000	Weak transcription	Fetal Lung	lung
2	chr5:92238400-92241400	Weak transcription	Fetal Kidney	kidney
3	chr5:92239600-92240200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:92239600-92240200	Enhancers	HepG2	liver
5	chr5:92239800-92240200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:92239800-92240200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:92240000-92243000	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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