Variant report

Variant	rs61678206
Chromosome Location	chr11:59663503-59663504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56807325	0.83[AMR][1000 genomes]
rs57018855	1.00[ASN][1000 genomes]
rs58599361	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59180193	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59287057	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7120906	1.00[ASN][1000 genomes]
rs713136	1.00[ASN][1000 genomes]
rs73490907	0.83[AMR][1000 genomes]
rs73490959	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73490967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975330	chr11:59663142-59666889	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59660000-59666400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:59660000-59667000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:59660000-59668800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:59662800-59668200	Weak transcription	NHEK	skin
5	chr11:59662800-59668400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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