Variant report

Variant	rs61686844
Chromosome Location	chr3:23110239-23110240
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs58744973	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6794571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6804016	0.83[AMR][1000 genomes]
rs73145951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145952	0.85[AMR][1000 genomes]
rs73145969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9849300	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9859420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9870020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9875332	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23105000-23121400	Weak transcription	Psoas Muscle	Psoas
2	chr3:23108400-23111000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:23108400-23115600	Weak transcription	Fetal Lung	lung
4	chr3:23108600-23110400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:23108600-23112400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:23108800-23110400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr3:23108800-23110400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:23108800-23115800	Enhancers	Primary B cells from peripheral blood	blood
9	chr3:23109000-23110400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:23109200-23110400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:23109200-23110400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:23109200-23110400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr3:23109200-23111000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:23109400-23111600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:23109600-23111600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:23109800-23110400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:23109800-23112200	Weak transcription	Adipose Nuclei	Adipose
18	chr3:23109800-23113000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:23110000-23110400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr3:23110000-23110400	Enhancers	Stomach Mucosa	stomach
21	chr3:23110000-23112200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:23110000-23113200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:23110200-23110600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr3:23110200-23112000	Weak transcription	Primary B cells from cord blood	blood
25	chr3:23110200-23112200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr3:23110200-23112200	Weak transcription	Monocytes-CD14+_RO01746	blood

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