Variant report
Variant | rs61691090 |
---|---|
Chromosome Location | chr3:25279173-25279174 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs13069258 | 0.90[ASN][1000 genomes] |
rs1483855 | 0.87[ASN][1000 genomes] |
rs167734 | 0.99[ASN][1000 genomes] |
rs188923 | 0.95[ASN][1000 genomes] |
rs2060565 | 0.96[ASN][1000 genomes] |
rs2082932 | 0.91[ASN][1000 genomes] |
rs2885835 | 0.97[ASN][1000 genomes] |
rs322711 | 0.97[ASN][1000 genomes] |
rs322713 | 0.97[ASN][1000 genomes] |
rs322714 | 0.96[ASN][1000 genomes] |
rs322715 | 0.96[ASN][1000 genomes] |
rs55793955 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs60540126 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6550958 | 0.97[ASN][1000 genomes] |
rs6778300 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6781087 | 0.94[ASN][1000 genomes] |
rs6798155 | 0.97[ASN][1000 genomes] |
rs73821765 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7635517 | 0.90[ASN][1000 genomes] |
rs9829952 | 0.93[ASN][1000 genomes] |
rs9830578 | 0.91[ASN][1000 genomes] |
rs9868267 | 0.91[ASN][1000 genomes] |
rs9876917 | 0.99[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv949035 | chr3:25194301-26084890 | Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 68 gene(s) | inside rSNPs | diseases |
2 | nsv508213 | chr3:25206150-25326196 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv1012646 | chr3:25277328-25322125 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv1006455 | chr3:25277328-25327235 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:25276600-25288600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |