Variant report

Variant	rs61704340
Chromosome Location	chr8:62515478-62515479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11539105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11987270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11987285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57787482	1.00[EUR][1000 genomes]
rs58325626	1.00[EUR][1000 genomes]
rs59038492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60140341	1.00[EUR][1000 genomes]
rs61217047	1.00[AMR][1000 genomes]
rs61565764	1.00[EUR][1000 genomes]
rs7016371	1.00[EUR][1000 genomes]
rs73259354	1.00[EUR][1000 genomes]
rs73259357	1.00[EUR][1000 genomes]
rs73259365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73259370	1.00[EUR][1000 genomes]
rs73259374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73259381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73259382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73259398	1.00[EUR][1000 genomes]
rs73259402	1.00[EUR][1000 genomes]
rs73261103	1.00[EUR][1000 genomes]
rs73261115	1.00[EUR][1000 genomes]
rs73263152	1.00[EUR][1000 genomes]
rs73263158	1.00[EUR][1000 genomes]
rs73263168	1.00[EUR][1000 genomes]
rs73263187	1.00[EUR][1000 genomes]
rs73263194	1.00[EUR][1000 genomes]
rs73265171	1.00[EUR][1000 genomes]
rs73265199	1.00[EUR][1000 genomes]
rs73682364	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027742	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv539633	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1021377	chr8:62214279-62596721	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv539634	chr8:62214279-62596721	ZNF genes & repeats Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1029046	chr8:62224341-62535277	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv1032489	chr8:62450784-62555994	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv539635	chr8:62450784-62555994	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	esv3479336	chr8:62512717-62515549	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	esv3479335	chr8:62512723-62515504	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
12	esv3479334	chr8:62512746-62515491	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	esv3479337	chr8:62512763-62515526	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62468600-62549000	Weak transcription	Right Ventricle	heart
2	chr8:62489200-62528800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:62494200-62519400	Weak transcription	Esophagus	oesophagus
4	chr8:62494200-62520400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr8:62494200-62521400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:62495400-62529000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:62495600-62525800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr8:62498400-62521200	Weak transcription	Ovary	ovary
9	chr8:62499200-62519400	Weak transcription	Liver	Liver
10	chr8:62503000-62521200	Weak transcription	Aorta	Aorta
11	chr8:62504800-62516600	Weak transcription	NH-A	brain
12	chr8:62504800-62526800	Weak transcription	NHEK	skin
13	chr8:62504800-62536200	Weak transcription	HUVEC	blood vessel
14	chr8:62506200-62528800	Weak transcription	HepG2	liver
15	chr8:62506400-62526200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:62506600-62541400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:62508400-62516600	Weak transcription	HSMMtube	muscle
18	chr8:62508400-62516600	Weak transcription	Osteobl	bone
19	chr8:62508800-62517200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr8:62508800-62520800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:62508800-62549800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr8:62509000-62516400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr8:62509000-62516400	Weak transcription	NHLF	lung
24	chr8:62509000-62521400	Weak transcription	Fetal Stomach	stomach
25	chr8:62509000-62523200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr8:62509200-62517800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr8:62509200-62520800	Weak transcription	Gastric	stomach
28	chr8:62509200-62521400	Weak transcription	Lung	lung
29	chr8:62509200-62521400	Weak transcription	Pancreas	Pancrea
30	chr8:62509200-62521400	Weak transcription	Spleen	Spleen
31	chr8:62509400-62516000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:62509400-62517200	Weak transcription	Hela-S3	cervix
33	chr8:62511400-62567800	Weak transcription	Stomach Mucosa	stomach
34	chr8:62512000-62517800	Weak transcription	Small Intestine	intestine
35	chr8:62512800-62517800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr8:62513000-62515800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr8:62513000-62516600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:62513000-62516600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr8:62513000-62516600	Weak transcription	HSMM	muscle
40	chr8:62513000-62517200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr8:62513000-62523200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr8:62513000-62550200	Weak transcription	Brain Substantia Nigra	brain
43	chr8:62513000-62594800	Weak transcription	Brain Anterior Caudate	brain
44	chr8:62513200-62521600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr8:62513600-62533000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr8:62513800-62515800	Weak transcription	A549	lung
47	chr8:62513800-62516200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:62513800-62519600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr8:62514000-62524000	Weak transcription	Fetal Intestine Small	intestine
50	chr8:62514200-62516000	Weak transcription	NHDF-Ad	bronchial

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