Variant report

Variant	rs61734482
Chromosome Location	chr1:160851055-160851056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160850691..160852389-chr1:160852476..160855044,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179914	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs57704705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58475782	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60513470	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60517509	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012053	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012079	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012091	1.00[AMR][1000 genomes]
rs73020000	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020001	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021982	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021996	1.00[AMR][1000 genomes]
rs73022002	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023905	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023999	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73024002	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025715	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025723	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027804	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027807	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027815	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027821	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029710	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029732	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029740	0.87[AFR][1000 genomes]
rs73029742	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029751	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
4	nsv946457	chr1:160850522-160852172	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160846800-160854200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:160847200-160852400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr1:160847600-160853800	Weak transcription	Spleen	Spleen
4	chr1:160848600-160851200	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr1:160849000-160852200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:160849200-160855400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:160849400-160854200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:160850600-160851800	Active TSS	Rectal Mucosa Donor 31	rectum
9	chr1:160851000-160855400	Enhancers	Monocytes-CD14+_RO01746	blood

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