Variant report

Variant	rs61734716
Chromosome Location	chr4:87749297-87749298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10516779	1.00[AMR][1000 genomes]
rs10516781	1.00[AMR][1000 genomes]
rs17012014	1.00[AMR][1000 genomes]
rs17012069	1.00[AMR][1000 genomes]
rs55875249	1.00[AMR][1000 genomes]
rs61537748	1.00[AMR][1000 genomes]
rs73835705	1.00[AMR][1000 genomes]
rs73835706	1.00[AMR][1000 genomes]
rs73835709	1.00[AMR][1000 genomes]
rs73835713	1.00[AMR][1000 genomes]
rs73835762	1.00[AMR][1000 genomes]
rs73835765	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87712600-87751400	Weak transcription	Aorta	Aorta
2	chr4:87731200-87756000	Weak transcription	Pancreas	Pancrea
3	chr4:87732400-87760000	Weak transcription	Psoas Muscle	Psoas
4	chr4:87737600-87752600	Weak transcription	Esophagus	oesophagus
5	chr4:87737800-87754800	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:87738200-87752000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:87739800-87757600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:87740200-87755200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:87740400-87752000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:87741200-87752200	Weak transcription	Fetal Lung	lung
11	chr4:87743200-87769400	Weak transcription	Right Ventricle	heart
12	chr4:87745400-87757400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:87747000-87751600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:87747400-87751400	Strong transcription	NHEK	skin
15	chr4:87747400-87751600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:87747400-87751600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:87747400-87752200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:87748000-87750200	Strong transcription	Adipose Nuclei	Adipose
19	chr4:87748400-87751200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:87748600-87751200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:87749000-87749400	Strong transcription	Left Ventricle	heart

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