Variant report

Variant	rs61739165
Chromosome Location	chr14:32562053-32562054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:32561111-32562579	A549	lung:	n/a	n/a
2	POLR2A	chr14:32561595-32563670	HepG2	liver:	n/a	n/a
3	POLR2A	chr14:32561579-32563821	K562	blood:	n/a	n/a

Variant related genes	Relation type
ARHGAP5	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61747596	1.00[AFR][1000 genomes]
rs8022061	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv974322	chr14:32560175-32563287	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32547600-32571400	Weak transcription	Spleen	Spleen
2	chr14:32548000-32586200	Weak transcription	Lung	lung
3	chr14:32548000-32597400	Weak transcription	Esophagus	oesophagus
4	chr14:32548400-32569600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:32548400-32571200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr14:32548600-32564600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:32548600-32584000	Weak transcription	Fetal Stomach	stomach
8	chr14:32548800-32570600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr14:32548800-32571600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:32548800-32572800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:32549000-32574000	Weak transcription	Aorta	Aorta
12	chr14:32549200-32570800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr14:32549200-32571600	Weak transcription	K562	blood
14	chr14:32550200-32563600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:32551000-32574000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr14:32552000-32573600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr14:32552000-32596800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:32553200-32567600	Weak transcription	Right Ventricle	heart
19	chr14:32554600-32597200	Weak transcription	Gastric	stomach
20	chr14:32555000-32579600	Weak transcription	NHLF	lung
21	chr14:32555600-32564600	Weak transcription	Fetal Intestine Small	intestine
22	chr14:32555600-32570800	Weak transcription	GM12878-XiMat	blood
23	chr14:32555600-32571400	Weak transcription	Small Intestine	intestine
24	chr14:32555600-32573600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr14:32555800-32570400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr14:32557200-32564600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr14:32557200-32570200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr14:32557400-32562400	Weak transcription	Fetal Heart	heart
29	chr14:32557400-32573400	Weak transcription	Stomach Mucosa	stomach
30	chr14:32557600-32563400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr14:32557800-32571400	Weak transcription	Thymus	Thymus
32	chr14:32557800-32571600	Weak transcription	Colon Smooth Muscle	Colon
33	chr14:32558800-32563600	Strong transcription	A549	lung
34	chr14:32559200-32562600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:32559200-32563800	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr14:32559200-32564200	Strong transcription	Dnd41	blood
37	chr14:32559200-32564800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr14:32559200-32570200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr14:32559400-32563600	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr14:32559400-32564400	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr14:32559400-32566800	Strong transcription	HepG2	liver
42	chr14:32559400-32571200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr14:32559600-32562400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr14:32559600-32563000	Strong transcription	Primary B cells from peripheral blood	blood
45	chr14:32559600-32564200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr14:32559600-32564200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr14:32559600-32564200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr14:32559600-32564200	Strong transcription	Liver	Liver
49	chr14:32559600-32565000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr14:32559600-32566800	Strong transcription	HUES64 Cell Line	embryonic stem cell

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