Variant report

Variant	rs61740530
Chromosome Location	chr5:97675161-97675162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10035546	0.82[EUR][1000 genomes]
rs10036788	0.96[EUR][1000 genomes]
rs10036839	0.96[EUR][1000 genomes]
rs10050404	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050543	0.82[EUR][1000 genomes]
rs10054643	0.96[EUR][1000 genomes]
rs10074663	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077621	0.81[AMR][1000 genomes]
rs11950953	0.96[EUR][1000 genomes]
rs11953877	0.96[EUR][1000 genomes]
rs11953894	0.96[EUR][1000 genomes]
rs11954911	0.96[EUR][1000 genomes]
rs11955115	0.96[EUR][1000 genomes]
rs11955987	0.96[EUR][1000 genomes]
rs12517476	0.86[EUR][1000 genomes]
rs12520566	0.86[EUR][1000 genomes]
rs13436010	0.87[ASN][1000 genomes]
rs1378443	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1378445	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455424	0.91[EUR][1000 genomes]
rs1455425	0.96[EUR][1000 genomes]
rs1455432	0.86[EUR][1000 genomes]
rs17165878	0.96[EUR][1000 genomes]
rs2368550	1.00[ASN][1000 genomes]
rs35382921	0.86[EUR][1000 genomes]
rs4703347	0.86[EUR][1000 genomes]
rs4703354	0.82[EUR][1000 genomes]
rs59277777	0.86[EUR][1000 genomes]
rs59423561	0.96[EUR][1000 genomes]
rs60702807	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62369875	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6594645	0.86[EUR][1000 genomes]
rs6594647	0.86[EUR][1000 genomes]
rs6596727	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6596729	1.00[ASN][1000 genomes]
rs6596743	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6596748	0.96[EUR][1000 genomes]
rs6862206	0.96[EUR][1000 genomes]
rs6863762	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870895	0.86[EUR][1000 genomes]
rs6871138	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6872831	0.96[EUR][1000 genomes]
rs6877032	0.96[EUR][1000 genomes]
rs6882939	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6885953	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6887168	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889222	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890493	0.82[EUR][1000 genomes]
rs73159220	0.96[EUR][1000 genomes]
rs73159222	0.96[EUR][1000 genomes]
rs73159223	0.96[EUR][1000 genomes]
rs73159226	0.96[EUR][1000 genomes]
rs73159258	0.86[EUR][1000 genomes]
rs7702659	0.86[EUR][1000 genomes]
rs7718848	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728104	1.00[ASN][1000 genomes]
rs7734263	0.86[EUR][1000 genomes]
rs7734271	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv1831511	chr5:97666860-97678414	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	esv1803610	chr5:97670855-97678414	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	esv1829863	chr5:97674522-97678414	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
7	esv1830760	chr5:97674522-97678414	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
8	esv1842306	chr5:97674522-97678414	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	nsv968964	chr5:97675149-97676043	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97672800-97676400	Weak transcription	Osteobl	bone
2	chr5:97673600-97676800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:97674400-97675400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:97674400-97675600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:97674800-97675200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:97674800-97675400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:97675000-97675200	ZNF genes & repeats	NHLF	lung

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