Variant report

Variant	rs61742590
Chromosome Location	chr1:224954712-224954713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11810181	0.97[EUR][1000 genomes]
rs1811405	0.81[EUR][1000 genomes]
rs56763434	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73125887	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74146277	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224944800-224954800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:224948000-224956800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:224953000-224960800	Weak transcription	Pancreas	Pancrea
4	chr1:224953800-224955000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:224954000-224955000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:224954000-224955800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:224954000-224956200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr1:224954400-224955400	Weak transcription	Fetal Brain Male	brain
9	chr1:224954600-224955800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr1:224954600-224956000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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