Variant report

Variant	rs61743299
Chromosome Location	chr2:21225597-21225598
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:23)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:23 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr2:21225269-21226142	HepG2	liver:	n/a	n/a
2	MYBL2	chr2:21223967-21226141	HepG2	liver:	n/a	n/a
3	FOSL2	chr2:21225372-21226181	HepG2	liver:	n/a	n/a
4	CEBPB	chr2:21225594-21225884	HepG2	liver:	n/a	n/a
5	CHD2	chr2:21225532-21226102	HepG2	liver:	n/a	n/a
6	POLR2A	chr2:21224100-21267126	HepG2	liver:	n/a	n/a
7	FOXA2	chr2:21225487-21226204	HepG2	liver:	n/a	n/a
8	POLR2A	chr2:21224141-21226172	HepG2	liver:	n/a	n/a
9	MYBL2	chr2:21224101-21226174	HepG2	liver:	n/a	n/a
10	MBD4	chr2:21224104-21238956	HepG2	liver:	n/a	n/a
11	HEY1	chr2:21224107-21233145	HepG2	liver:	n/a	n/a
12	FOXA1	chr2:21225430-21226263	HepG2	liver:	n/a	n/a
13	MBD4	chr2:21224090-21233169	HepG2	liver:	n/a	n/a
14	REST	chr2:21225528-21225737	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr2:21225529-21225659	HepG2	liver:	n/a	n/a
16	POLR2A	chr2:21224144-21226208	HepG2	liver:	n/a	n/a
17	TEAD4	chr2:21224059-21239057	HepG2	liver:	n/a	n/a
18	FOXA1	chr2:21225549-21226200	HepG2	liver:	n/a	n/a
19	POLR2A	chr2:21224116-21239694	HepG2	liver:	n/a	n/a
20	ARID3A	chr2:21224093-21225979	HepG2	liver:	n/a	n/a
21	POLR2A	chr2:21224019-21267588	HepG2	liver:	n/a	n/a
22	JUND	chr2:21225561-21225919	HepG2	liver:	n/a	n/a
23	POLR2A	chr2:21224065-21268658	HepG2	liver:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:21224463..21227068-chr2:21229153..21232894,3	K562	blood:
2	chr2:21225502..21228297-chr2:21234763..21236459,2	K562	blood:
3	chr2:21224463..21226002-chr2:21230053..21232894,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C2orf43-7	chr2:21225293-21225747	NONHSAT069470

No data

Variant related genes	Relation type
ENSG00000261012	TF binding region

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12713675	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12720770	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12720812	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12720813	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12720852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12720855	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16988071	1.00[EUR][1000 genomes]
rs1866043	1.00[EUR][1000 genomes]
rs340605	1.00[EUR][1000 genomes]
rs340608	1.00[EUR][1000 genomes]
rs340614	1.00[EUR][1000 genomes]
rs548324	1.00[EUR][1000 genomes]
rs571566	1.00[EUR][1000 genomes]
rs582107	1.00[EUR][1000 genomes]
rs59995050	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61072469	1.00[EUR][1000 genomes]
rs642152	1.00[EUR][1000 genomes]
rs662193	1.00[EUR][1000 genomes]
rs72654435	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72888848	1.00[EUR][1000 genomes]
rs72888854	1.00[EUR][1000 genomes]
rs72888855	1.00[EUR][1000 genomes]
rs72888859	1.00[EUR][1000 genomes]
rs72890734	1.00[EUR][1000 genomes]
rs72890747	1.00[EUR][1000 genomes]
rs72890758	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890763	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890771	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890775	1.00[EUR][1000 genomes]
rs72890778	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890781	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890784	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890789	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890791	1.00[EUR][1000 genomes]
rs72902534	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72902535	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72902538	1.00[EUR][1000 genomes]
rs72902540	1.00[EUR][1000 genomes]
rs72902541	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72902542	1.00[EUR][1000 genomes]
rs72902544	1.00[EUR][1000 genomes]
rs72902548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73224614	1.00[EUR][1000 genomes]
rs73226544	1.00[EUR][1000 genomes]
rs73226553	1.00[EUR][1000 genomes]
rs73226559	1.00[EUR][1000 genomes]
rs839914	1.00[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21216400-21225600	Weak transcription	Aorta	Aorta
2	chr2:21220200-21225600	Weak transcription	Left Ventricle	heart
3	chr2:21222800-21234600	Weak transcription	Adipose Nuclei	Adipose
4	chr2:21223200-21245600	Strong transcription	Liver	Liver
5	chr2:21224200-21227200	Strong transcription	HepG2	liver
6	chr2:21224400-21229000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr2:21224800-21226000	Strong transcription	Fetal Intestine Large	intestine

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