Variant report

Variant	rs61745064
Chromosome Location	chr1:225140459-225140460
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10915712	1.00[EUR][1000 genomes]
rs10915713	1.00[EUR][1000 genomes]
rs58883363	1.00[EUR][1000 genomes]
rs59263273	1.00[EUR][1000 genomes]
rs59279645	1.00[EUR][1000 genomes]
rs59777302	1.00[EUR][1000 genomes]
rs60002937	1.00[EUR][1000 genomes]
rs60489231	1.00[EUR][1000 genomes]
rs60846144	1.00[EUR][1000 genomes]
rs61564365	1.00[EUR][1000 genomes]
rs73127901	1.00[EUR][1000 genomes]
rs73129810	1.00[EUR][1000 genomes]
rs73129812	1.00[EUR][1000 genomes]
rs73129837	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73129838	1.00[EUR][1000 genomes]
rs73129850	1.00[EUR][1000 genomes]
rs73129853	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73129855	1.00[EUR][1000 genomes]
rs73129861	1.00[EUR][1000 genomes]
rs73129867	1.00[EUR][1000 genomes]
rs73129870	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73129894	1.00[EUR][1000 genomes]
rs73129898	1.00[EUR][1000 genomes]
rs73129900	1.00[EUR][1000 genomes]
rs73131704	1.00[EUR][1000 genomes]
rs73133542	1.00[EUR][1000 genomes]
rs73133544	1.00[EUR][1000 genomes]
rs73133554	1.00[EUR][1000 genomes]
rs73133577	1.00[EUR][1000 genomes]
rs73133578	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73133591	1.00[EUR][1000 genomes]
rs73133599	1.00[EUR][1000 genomes]
rs73133601	1.00[EUR][1000 genomes]
rs73135010	1.00[EUR][1000 genomes]
rs7522229	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7554589	1.00[EUR][1000 genomes]
rs9659564	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757773	chr1:225087924-225253274	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2759001	chr1:225087924-225253274	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1005824	chr1:225114654-225158871	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv3438976	chr1:225133567-225248753	Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1804634	chr1:225137134-225206826	Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225133600-225156200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:225134200-225148600	Weak transcription	Pancreas	Pancrea
3	chr1:225135000-225146600	Weak transcription	HepG2	liver
4	chr1:225135200-225148600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:225136600-225145000	Weak transcription	K562	blood
6	chr1:225138200-225152800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:225138600-225155600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:225138800-225148600	Weak transcription	Fetal Intestine Large	intestine
9	chr1:225138800-225163800	Weak transcription	Hela-S3	cervix
10	chr1:225139200-225148600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:225139800-225148600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr1:225140000-225158400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:225140400-225140800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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