Variant report

Variant	rs61746870
Chromosome Location	chr18:24588840-24588841
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs60114117	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9946015	1.00[AMR][1000 genomes]
rs9948442	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv909472	chr18:24479960-24614192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24545600-24590400	Weak transcription	Pancreas	Pancrea
2	chr18:24570400-24598200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr18:24584600-24589000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr18:24588000-24589200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr18:24588200-24589600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr18:24588400-24589400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr18:24588400-24589600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr18:24588600-24589400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr18:24588600-24592600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr18:24588800-24589200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr18:24588800-24589200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr18:24588800-24589600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr18:24588800-24589800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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