Variant report

Variant	rs61747621
Chromosome Location	chr4:86985449-86985450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs36067390	1.00[AMR][1000 genomes]
rs72865380	1.00[AMR][1000 genomes]
rs72865381	1.00[AMR][1000 genomes]
rs72865386	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1005458	chr4:86974515-86991990	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv517318	chr4:86975062-86990027	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2760917	chr4:86975062-87000221	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1014691	chr4:86976082-86986516	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv999551	chr4:86976082-86991990	ZNF genes & repeats Strong transcription Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1006616	chr4:86976082-86999794	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1000186	chr4:86976082-87000209	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1011713	chr4:86976379-86991990	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv594761	chr4:86976413-87018488	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv2754254	chr4:86979147-87108510	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv879521	chr4:86979927-87165758	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:86949200-86988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:86955200-87003800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:86958400-86992600	Weak transcription	Fetal Kidney	kidney
5	chr4:86963600-86988800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:86965200-86985800	Weak transcription	Adipose Nuclei	Adipose
7	chr4:86965200-86987000	Weak transcription	Brain Substantia Nigra	brain
8	chr4:86970000-86988400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:86971800-87003800	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:86975200-87003600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:86976200-86987800	Weak transcription	Brain Germinal Matrix	brain
12	chr4:86976400-87000200	Weak transcription	Fetal Brain Female	brain
13	chr4:86976800-86986400	Weak transcription	Fetal Brain Male	brain
14	chr4:86977400-87003800	Weak transcription	Brain Anterior Caudate	brain
15	chr4:86978800-86988800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:86980000-87004000	Weak transcription	Fetal Stomach	stomach
17	chr4:86981600-86987000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr4:86983400-86986200	Weak transcription	Fetal Lung	lung
19	chr4:86984200-86985800	Strong transcription	Brain Cingulate Gyrus	brain
20	chr4:86985000-86985800	Strong transcription	Brain Inferior Temporal Lobe	brain
21	chr4:86985000-86989000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:86985400-86985600	ZNF genes & repeats	Aorta	Aorta
23	chr4:86985400-86985800	Strong transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links