Variant report

Variant	rs61752571
Chromosome Location	chr5:59960397-59960398
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1026418	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1379111	0.85[ASN][1000 genomes]
rs1379113	0.85[ASN][1000 genomes]
rs1563516	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16878315	0.85[ASN][1000 genomes]
rs1870012	0.83[ASN][1000 genomes]
rs1870013	0.85[ASN][1000 genomes]
rs2045355	0.85[ASN][1000 genomes]
rs2061254	0.83[AFR][1000 genomes]
rs2124751	0.85[ASN][1000 genomes]
rs2124753	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2441052	0.80[AFR][1000 genomes]
rs2591635	0.82[AFR][1000 genomes]
rs286152	0.83[AFR][1000 genomes]
rs34414908	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34915115	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7702459	0.85[ASN][1000 genomes]
rs7706896	0.83[ASN][1000 genomes]
rs7708849	0.85[ASN][1000 genomes]
rs7712043	0.85[ASN][1000 genomes]
rs7719525	0.85[ASN][1000 genomes]
rs897671	0.85[ASN][1000 genomes]
rs897673	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv492277	chr5:59905195-60180834	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv968916	chr5:59944877-59962647	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59926400-59967800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:59933400-59965200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:59933600-59981000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:59936600-59961400	Weak transcription	Thymus	Thymus
5	chr5:59936800-59961800	Weak transcription	Fetal Thymus	thymus
6	chr5:59942800-59961600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:59943400-59977000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:59945000-59961800	Weak transcription	HepG2	liver
9	chr5:59953200-59962000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:59954000-59961800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:59954000-59980200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:59954600-59969200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:59954800-59961800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:59955000-59961400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:59955000-59961400	Weak transcription	Dnd41	blood
16	chr5:59955000-59966600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr5:59955400-59961800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:59955600-59965800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr5:59955800-59960800	Weak transcription	Placenta	Placenta
20	chr5:59956800-59961000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:59956800-59981800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr5:59957000-59977000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr5:59957200-59962000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr5:59957800-59961800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr5:59958800-59961400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr5:59958800-59966600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr5:59959000-59961800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr5:59959400-59961800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr5:59959400-59962400	Weak transcription	Fetal Muscle Leg	muscle
30	chr5:59959800-59962800	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr5:59960000-59960600	Strong transcription	Fetal Intestine Large	intestine
32	chr5:59960000-59962800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:59960000-59965000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr5:59960000-59968600	Weak transcription	GM12878-XiMat	blood
35	chr5:59960000-59970600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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