Variant report

Variant	rs61753724
Chromosome Location	chr8:100733188-100733189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10504990	0.88[EUR][1000 genomes]
rs10504991	0.88[EUR][1000 genomes]
rs10504992	0.88[EUR][1000 genomes]
rs11984855	0.82[EUR][1000 genomes]
rs11987013	0.88[EUR][1000 genomes]
rs11987034	0.88[EUR][1000 genomes]
rs11988133	0.88[EUR][1000 genomes]
rs11989649	0.85[EUR][1000 genomes]
rs11992778	0.88[EUR][1000 genomes]
rs11994623	0.88[EUR][1000 genomes]
rs11996543	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1349244	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1349245	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1449786	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1449790	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1449791	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1552443	0.88[EUR][1000 genomes]
rs16897410	0.88[EUR][1000 genomes]
rs16897439	0.88[EUR][1000 genomes]
rs16897488	0.88[EUR][1000 genomes]
rs16897504	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16897573	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16897581	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs16897656	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16897662	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16897666	1.00[EUR][1000 genomes]
rs16897685	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16897701	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16897702	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16897708	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16897713	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16897726	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16897728	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17331148	1.00[EUR][1000 genomes]
rs1979115	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1979117	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2067529	0.85[EUR][1000 genomes]
rs2084554	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2084555	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2100220	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2122341	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2167101	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28372694	0.82[EUR][1000 genomes]
rs2871953	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28847009	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4288349	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4342557	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4531021	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4734434	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4734435	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734436	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734437	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4734438	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4734439	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4735616	0.88[EUR][1000 genomes]
rs4735622	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4735623	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4735624	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4735631	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4735632	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735633	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4735634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735635	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735636	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4735637	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4735638	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4735639	0.82[AFR][1000 genomes]
rs4735642	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4735644	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4735645	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4735646	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56912854	0.94[AMR][1000 genomes]
rs57753543	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7003135	0.97[EUR][1000 genomes]
rs73271394	0.94[EUR][1000 genomes]
rs73273207	0.97[EUR][1000 genomes]
rs7387462	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7832916	0.88[EUR][1000 genomes]
rs7833256	0.88[EUR][1000 genomes]
rs7833870	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841162	0.82[EUR][1000 genomes]
rs921313	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891227	chr8:100295634-100743556	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1019256	chr8:100336249-100852803	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539698	chr8:100336249-100852803	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2758167	chr8:100404151-100838624	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	esv2759633	chr8:100404151-100838624	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1029616	chr8:100442135-100796643	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100687000-100739800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:100699800-100733200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr8:100700400-100733800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:100710200-100739800	Weak transcription	Psoas Muscle	Psoas
5	chr8:100710200-100785000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:100713000-100733200	Weak transcription	Left Ventricle	heart
7	chr8:100713200-100746800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:100715200-100737400	Weak transcription	Fetal Intestine Large	intestine
9	chr8:100716400-100739000	Weak transcription	Fetal Kidney	kidney
10	chr8:100716800-100744400	Weak transcription	Aorta	Aorta
11	chr8:100717400-100736600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:100718200-100733200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:100719600-100750600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:100720000-100737000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr8:100725600-100779800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:100726000-100740200	Weak transcription	HSMMtube	muscle
17	chr8:100727000-100779000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr8:100727600-100733200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr8:100727600-100733200	Weak transcription	NHDF-Ad	bronchial
20	chr8:100727600-100735200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr8:100727600-100735800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr8:100727600-100736000	Weak transcription	Thymus	Thymus
23	chr8:100727600-100737600	Weak transcription	Gastric	stomach
24	chr8:100727600-100739600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:100727600-100740200	Weak transcription	NHLF	lung
26	chr8:100727600-100746200	Weak transcription	Liver	Liver
27	chr8:100727600-100751800	Weak transcription	HSMM	muscle
28	chr8:100727800-100733200	Weak transcription	Adipose Nuclei	Adipose
29	chr8:100728000-100737400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr8:100728000-100744000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr8:100728200-100740000	Weak transcription	Osteobl	bone
32	chr8:100728400-100735600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr8:100728400-100765600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr8:100728600-100735800	Weak transcription	Fetal Stomach	stomach
35	chr8:100728600-100738000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr8:100728600-100739200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr8:100728800-100734800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr8:100728800-100739600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr8:100728800-100739800	Weak transcription	Fetal Intestine Small	intestine
40	chr8:100728800-100746200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr8:100728800-100747200	Weak transcription	Dnd41	blood
42	chr8:100729600-100738200	Strong transcription	Primary B cells from cord blood	blood
43	chr8:100729600-100744800	Weak transcription	Lung	lung
44	chr8:100729800-100735800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr8:100730000-100736000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:100730000-100745800	Weak transcription	Brain Angular Gyrus	brain
47	chr8:100730200-100750000	Weak transcription	GM12878-XiMat	blood
48	chr8:100730400-100738800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr8:100731600-100738600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr8:100731600-100745800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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