Variant report

Variant	rs61753738
Chromosome Location	chr8:113276045-113276046
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16883329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883337	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700902	0.88[AFR][1000 genomes]
rs73709204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709206	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113275000-113276200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:113275000-113276200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr8:113275200-113276200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:113275200-113276200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:113275400-113280200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:113275600-113276400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:113275800-113276200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:113276000-113279200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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