The 2.0 version of rSNPBase

Variant report

Variant rs61754245
Chromosome Location chr2:33484666-33484667
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:33403800-33489800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr2:33466400-33497400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr2:33466600-33500800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr2:33466800-33491200 Weak transcription Right Ventricle heart
5 chr2:33468200-33491000 Weak transcription Fetal Adrenal Gland Adrenal Gland
6 chr2:33469800-33486200 Weak transcription NHDF-Ad bronchial
7 chr2:33471800-33491200 Weak transcription Pancreas Pancrea
8 chr2:33472000-33489800 Weak transcription A549 lung
9 chr2:33472000-33491200 Weak transcription Brain Substantia Nigra brain
10 chr2:33472000-33516600 Weak transcription Psoas Muscle Psoas
11 chr2:33472400-33491000 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr2:33472600-33492800 Weak transcription Colon Smooth Muscle Colon
13 chr2:33473200-33486600 Weak transcription Fetal Lung lung
14 chr2:33473600-33489800 Weak transcription Rectal Smooth Muscle rectum
15 chr2:33474000-33491000 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr2:33474200-33491200 Weak transcription Brain Hippocampus Middle brain
17 chr2:33474400-33489800 Weak transcription Placenta Placenta
18 chr2:33474400-33490000 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr2:33476200-33490000 Weak transcription Esophagus oesophagus
20 chr2:33476200-33490000 Weak transcription Fetal Intestine Small intestine
21 chr2:33476200-33491000 Weak transcription Gastric stomach
22 chr2:33476400-33487000 Weak transcription Fetal Muscle Leg muscle
23 chr2:33476400-33487400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr2:33476400-33488200 Weak transcription Ovary ovary
25 chr2:33476600-33488400 Weak transcription Fetal Muscle Trunk muscle
26 chr2:33477400-33491000 Weak transcription Fetal Stomach stomach
27 chr2:33477600-33489800 Weak transcription HUES64 Cell Line embryonic stem cell
28 chr2:33478000-33491000 Weak transcription Lung lung
29 chr2:33478800-33487200 Weak transcription NH-A brain
30 chr2:33478800-33488000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr2:33478800-33488200 Weak transcription Liver Liver
32 chr2:33478800-33491200 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr2:33479600-33487400 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr2:33480000-33488000 Weak transcription HUVEC blood vessel
35 chr2:33480600-33485400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr2:33480800-33485400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr2:33481000-33485600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr2:33482400-33485000 Enhancers Fetal Heart heart
39 chr2:33483200-33486600 Weak transcription Muscle Satellite Cultured Cells --
40 chr2:33483400-33486200 Weak transcription NHLF lung
41 chr2:33483600-33488000 Weak transcription Stomach Smooth Muscle stomach
42 chr2:33483800-33485800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
43 chr2:33483800-33486200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr2:33483800-33486800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr2:33483800-33489800 Weak transcription Aorta Aorta
46 chr2:33483800-33491000 Weak transcription Left Ventricle heart
47 chr2:33484000-33487800 Weak transcription Osteobl bone
48 chr2:33484600-33488000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015