Variant report

Variant	rs61763087
Chromosome Location	chr11:17113332-17113333
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17113019..17115977-chr11:17116929..17118589,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11024138	1.00[AFR][1000 genomes]
rs11024168	0.83[AFR][1000 genomes]
rs11024169	0.91[AFR][1000 genomes]
rs11024170	0.83[AFR][1000 genomes]
rs11024172	0.83[AFR][1000 genomes]
rs11024176	0.83[AFR][1000 genomes]
rs11024177	0.83[AFR][1000 genomes]
rs12270759	0.81[AFR][1000 genomes]
rs12275377	0.83[AFR][1000 genomes]
rs12283841	0.83[AFR][1000 genomes]
rs12285914	1.00[AFR][1000 genomes]
rs12287127	0.83[AFR][1000 genomes]
rs12288475	0.83[AFR][1000 genomes]
rs12289881	0.83[AFR][1000 genomes]
rs12291395	1.00[AFR][1000 genomes]
rs12292965	1.00[AFR][1000 genomes]
rs28544981	0.83[AFR][1000 genomes]
rs61762000	0.91[AFR][1000 genomes]
rs61763070	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17100200-17115000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr11:17100400-17119200	Weak transcription	Esophagus	oesophagus
3	chr11:17100400-17119200	Weak transcription	Pancreas	Pancrea
4	chr11:17100400-17119800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:17100400-17157200	Weak transcription	Fetal Heart	heart
6	chr11:17100600-17115000	Weak transcription	Spleen	Spleen
7	chr11:17100600-17124200	Weak transcription	Fetal Brain Male	brain
8	chr11:17100800-17119600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:17101600-17145000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:17106800-17156600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:17107800-17147200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:17108000-17113800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:17108200-17116800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:17108200-17141400	Strong transcription	Liver	Liver
17	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:17108400-17113800	Strong transcription	Primary B cells from cord blood	blood
19	chr11:17108400-17117000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr11:17108800-17126800	Strong transcription	Osteobl	bone
22	chr11:17109000-17113800	Strong transcription	NHDF-Ad	bronchial
23	chr11:17109000-17114200	Strong transcription	Brain Anterior Caudate	brain
24	chr11:17109000-17116400	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:17109000-17116800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr11:17109000-17117000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:17109000-17117000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr11:17109000-17121600	Strong transcription	Adipose Nuclei	Adipose
29	chr11:17109000-17121800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:17109200-17115800	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:17109200-17116800	Strong transcription	Duodenum Mucosa	Duodenum
32	chr11:17109200-17144600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:17109400-17113600	Strong transcription	Colon Smooth Muscle	Colon
34	chr11:17109400-17116800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:17109400-17128600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:17109400-17132600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr11:17109400-17148400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:17109600-17116800	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr11:17109600-17116800	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr11:17109600-17127600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr11:17109600-17147000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:17109800-17113600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:17109800-17116800	Strong transcription	Placenta	Placenta
44	chr11:17109800-17117000	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:17109800-17121600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:17109800-17158400	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr11:17110000-17113600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
48	chr11:17110000-17114200	Strong transcription	NHEK	skin
49	chr11:17110000-17116000	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr11:17110000-17116800	Strong transcription	Primary B cells from peripheral blood	blood

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