Variant report

Variant	rs61777126
Chromosome Location	chr1:71388302-71388303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10736414	0.81[AMR][1000 genomes]
rs17542063	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs493489	0.86[AMR][1000 genomes]
rs496216	0.86[AMR][1000 genomes]
rs508513	0.81[AMR][1000 genomes]
rs510414	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs532693	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs571705	0.81[AMR][1000 genomes]
rs573688	0.81[AMR][1000 genomes]
rs578096	0.81[AMR][1000 genomes]
rs579558	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs584532	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs600364	0.81[AMR][1000 genomes]
rs61777101	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61777123	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645618	0.86[AMR][1000 genomes]
rs651265	0.81[EUR][1000 genomes]
rs653699	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs657265	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs847704	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs847705	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv461840	chr1:71364105-71468493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv546471	chr1:71364105-71468493	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1002663	chr1:71372715-71465508	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv534987	chr1:71372715-71465508	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71388000-71389400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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