Variant report

Variant	rs61778683
Chromosome Location	chr1:71119856-71119857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12073510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131372	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17131373	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1932057	0.89[ASN][1000 genomes]
rs2152125	0.92[ASN][1000 genomes]
rs2782762	0.88[ASN][1000 genomes]
rs2782763	0.84[ASN][1000 genomes]
rs2782764	0.92[ASN][1000 genomes]
rs2820529	0.97[ASN][1000 genomes]
rs2820532	0.98[ASN][1000 genomes]
rs72684717	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871024	chr1:71088106-71169865	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv871703	chr1:71093805-71127061	Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71119800-71120000	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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