Variant report

Variant	rs61781046
Chromosome Location	chr1:94193826-94193827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs1108527	0.93[AMR][1000 genomes]
rs1467129	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2223908	0.83[AMR][1000 genomes]
rs61781048	0.81[AMR][1000 genomes]
rs61781049	0.93[AMR][1000 genomes]
rs61781053	0.90[AMR][1000 genomes]
rs61781057	0.90[AMR][1000 genomes]
rs61782400	0.83[AMR][1000 genomes]
rs72721074	0.94[EUR][1000 genomes]
rs72723114	0.90[AMR][1000 genomes]
rs72723125	0.90[AMR][1000 genomes]
rs7523682	0.90[AMR][1000 genomes]
rs871436	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs61781046	GCLM	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94188000-94198400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:94188800-94198400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:94189000-94194000	Weak transcription	Adipose Nuclei	Adipose
4	chr1:94189000-94195200	Weak transcription	Brain Angular Gyrus	brain
5	chr1:94189000-94195200	Weak transcription	Psoas Muscle	Psoas
6	chr1:94189000-94200000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:94189200-94194400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:94189200-94195800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:94189400-94195200	Weak transcription	Fetal Lung	lung
10	chr1:94189400-94197400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:94189600-94195200	Weak transcription	Placenta	Placenta
12	chr1:94189600-94198200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr1:94189800-94195200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:94189800-94196000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:94190000-94196600	Weak transcription	Hela-S3	cervix
16	chr1:94190000-94199000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:94190200-94198200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:94190400-94194200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr1:94190400-94199000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:94190600-94200800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:94192000-94194200	Weak transcription	Left Ventricle	heart
22	chr1:94193000-94198000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:94193400-94194400	Enhancers	Right Ventricle	heart
24	chr1:94193400-94198000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr1:94193600-94194400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:94193600-94196600	Enhancers	Fetal Muscle Leg	muscle
27	chr1:94193800-94194000	Enhancers	Primary B cells from peripheral blood	blood
28	chr1:94193800-94194400	Enhancers	Aorta	Aorta
29	chr1:94193800-94194400	Enhancers	Right Atrium	heart
30	chr1:94193800-94194400	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr1:94193800-94194400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr1:94193800-94196000	Enhancers	Fetal Muscle Trunk	muscle
33	chr1:94193800-94198200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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