Variant report

Variant	rs61818299
Chromosome Location	chr1:215259486-215259487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215259190..215261920-chr1:215262011..215264888,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10127521	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10127656	0.83[AMR][1000 genomes]
rs10746454	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10746455	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10779640	0.83[AMR][1000 genomes]
rs10779642	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10779643	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10864150	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10864154	0.83[AMR][1000 genomes]
rs11120495	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11120497	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11120500	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12039875	0.88[ASN][1000 genomes]
rs12135076	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12410041	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12742137	0.83[AMR][1000 genomes]
rs2363557	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2363558	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2363559	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2363560	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2885813	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2885815	0.82[AMR][1000 genomes]
rs4262516	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4269745	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4300189	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4303048	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4375232	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4531266	0.84[AMR][1000 genomes]
rs4571941	0.84[AMR][1000 genomes]
rs4607848	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61818297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61818320	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61818328	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6662353	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6675926	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6678758	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6688713	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6695967	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6696333	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6699161	0.86[ASN][1000 genomes]
rs72735327	0.84[ASN][1000 genomes]
rs72735329	0.84[ASN][1000 genomes]
rs72735337	0.83[ASN][1000 genomes]
rs7410928	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7513709	0.83[AMR][1000 genomes]
rs7516689	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7541543	0.83[AMR][1000 genomes]
rs7547655	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7555013	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7555727	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215254800-215260000	Active TSS	Fetal Brain Female	brain
2	chr1:215257200-215259800	Weak transcription	Gastric	stomach
3	chr1:215257400-215260600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:215257800-215260800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:215258200-215277600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:215258400-215261000	Weak transcription	Osteobl	bone
7	chr1:215258400-215265000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:215258400-215267400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:215258400-215277600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:215258600-215259600	Weak transcription	Fetal Brain Male	brain
11	chr1:215258800-215261200	Weak transcription	NHLF	lung
12	chr1:215259000-215259600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:215259200-215259800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:215259400-215260000	Strong transcription	NHDF-Ad	bronchial

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