Variant report

Variant	rs61818301
Chromosome Location	chr1:215261693-215261694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215259190..215261920-chr1:215262011..215264888,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10779638	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12061587	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12069528	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12069967	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12239750	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1947364	0.86[ASN][1000 genomes]
rs2363553	0.86[ASN][1000 genomes]
rs4420064	0.81[ASN][1000 genomes]
rs4589083	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55651080	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55662674	1.00[AMR][1000 genomes]
rs55790910	0.84[ASN][1000 genomes]
rs55922125	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56001365	1.00[AMR][1000 genomes]
rs56036238	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56053976	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56233922	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56257399	1.00[AMR][1000 genomes]
rs56274886	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56373924	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59581685	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60526056	1.00[AMR][1000 genomes]
rs61818261	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61818265	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818266	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818267	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818268	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818271	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818272	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818276	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818277	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818278	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818279	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818290	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818293	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818294	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818295	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818296	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818304	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818305	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818307	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818308	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818309	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818310	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818311	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818319	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818321	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818323	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818324	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818325	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818326	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818327	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818329	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818331	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818338	0.84[ASN][1000 genomes]
rs61818341	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818342	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818343	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818346	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818347	0.84[EUR][1000 genomes]
rs61818348	0.84[EUR][1000 genomes]
rs61818351	0.84[EUR][1000 genomes]
rs61819975	1.00[AMR][1000 genomes]
rs61819980	0.89[ASN][1000 genomes]
rs61819981	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61819982	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61820009	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61820011	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61820013	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61820014	0.89[ASN][1000 genomes]
rs61820015	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6665177	0.81[ASN][1000 genomes]
rs7535436	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551562	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215258200-215277600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:215258400-215265000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:215258400-215267400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:215258400-215277600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:215260200-215262800	Enhancers	HUVEC	blood vessel
6	chr1:215260200-215265600	Weak transcription	Gastric	stomach
7	chr1:215261000-215262400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:215261400-215261800	Weak transcription	Fetal Brain Male	brain
9	chr1:215261400-215261800	Active TSS	Fetal Brain Female	brain
10	chr1:215261400-215262000	Genic enhancers	NHDF-Ad	bronchial
11	chr1:215261400-215265200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:215261600-215263000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:215261600-215266000	Weak transcription	NHLF	lung
14	chr1:215261600-215266600	Strong transcription	Osteobl	bone

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