Variant report

Variant	rs61818309
Chromosome Location	chr1:215278922-215278923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10779638	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12061587	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12069528	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12069967	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12239750	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41283140	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4589083	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55790910	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs55922125	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56036238	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56053976	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56233922	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56274886	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56373924	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56373932	0.85[ASN][1000 genomes]
rs59581685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818265	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818266	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818267	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818268	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818271	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818272	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818276	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818277	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818278	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818279	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818290	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818293	0.84[EUR][1000 genomes]
rs61818294	0.84[EUR][1000 genomes]
rs61818295	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818296	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818298	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818301	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818303	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818326	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818331	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818338	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61818340	0.89[ASN][1000 genomes]
rs61818341	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818342	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818343	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818346	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818347	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818348	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818351	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7535436	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7551562	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215265400-215280800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:215278000-215285200	Weak transcription	NHDF-Ad	bronchial
3	chr1:215278000-215285400	Weak transcription	Osteobl	bone
4	chr1:215278200-215286600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:215278800-215279800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links