Variant report

Variant	rs61818348
Chromosome Location	chr1:215355713-215355714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215354699..215355750-chr1:215690763..215692016,3	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1015244	0.89[ASN][1000 genomes]
rs12069967	0.84[ASN][1000 genomes]
rs12121815	0.95[ASN][1000 genomes]
rs12239750	0.84[ASN][1000 genomes]
rs1339409	0.89[ASN][1000 genomes]
rs1538545	0.89[ASN][1000 genomes]
rs1538546	0.89[ASN][1000 genomes]
rs41283140	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4433363	0.95[ASN][1000 genomes]
rs55790910	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56053976	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56233922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56373924	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59581685	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818298	0.84[EUR][1000 genomes]
rs61818301	0.84[EUR][1000 genomes]
rs61818303	0.84[EUR][1000 genomes]
rs61818304	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818305	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818307	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818308	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818309	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818310	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818311	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818319	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818321	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818323	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818324	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818325	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818326	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818327	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818329	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61818331	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61818338	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818340	0.84[ASN][1000 genomes]
rs61818341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215354800-215356000	ZNF genes & repeats	NHDF-Ad	bronchial
2	chr1:215355000-215356000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:215355000-215356000	ZNF genes & repeats	NHLF	lung
4	chr1:215355000-215356000	ZNF genes & repeats	Osteobl	bone
5	chr1:215355000-215356200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:215355000-215356400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:215355000-215356400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:215355000-215356400	ZNF genes & repeats	Gastric	stomach
9	chr1:215355000-215356600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:215355200-215356000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:215355200-215356000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:215355200-215356200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:215355200-215356200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:215355200-215356400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
15	chr1:215355400-215356000	ZNF genes & repeats	Fetal Brain Female	brain

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