Variant report

Variant	rs61819677
Chromosome Location	chr1:215388087-215388088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10864168	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11120527	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11120529	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12094438	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12143625	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12402782	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12405930	0.83[EUR][1000 genomes]
rs12406223	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12409636	0.81[EUR][1000 genomes]
rs12409910	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1339397	0.83[EUR][1000 genomes]
rs1339398	0.83[EUR][1000 genomes]
rs1339413	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1416658	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1416659	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1538542	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17024619	0.82[EUR][1000 genomes]
rs17024624	0.83[EUR][1000 genomes]
rs17024632	0.81[EUR][1000 genomes]
rs17024638	0.83[EUR][1000 genomes]
rs17024649	0.83[EUR][1000 genomes]
rs17042179	0.81[EUR][1000 genomes]
rs1981211	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2211125	0.81[EUR][1000 genomes]
rs2211126	0.83[EUR][1000 genomes]
rs4356021	0.86[EUR][1000 genomes]
rs4356022	0.86[EUR][1000 genomes]
rs4384204	0.86[EUR][1000 genomes]
rs4442346	0.81[EUR][1000 genomes]
rs4489525	0.81[EUR][1000 genomes]
rs4512617	0.81[EUR][1000 genomes]
rs4655401	0.81[EUR][1000 genomes]
rs4655402	0.81[EUR][1000 genomes]
rs4655404	0.81[EUR][1000 genomes]
rs61819680	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61819705	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61819706	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61819707	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61819708	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61819709	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61819710	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61819711	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61819714	0.83[EUR][1000 genomes]
rs61819716	0.83[EUR][1000 genomes]
rs61819717	0.83[EUR][1000 genomes]
rs61819747	0.83[EUR][1000 genomes]
rs6686529	0.85[EUR][1000 genomes]
rs72737240	0.93[ASN][1000 genomes]
rs7549184	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	nsv873170	chr1:215367248-215440975	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215380600-215408000	Weak transcription	Osteobl	bone
2	chr1:215384800-215388800	Weak transcription	NHDF-Ad	bronchial
3	chr1:215384800-215391200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215385400-215389600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr1:215386600-215388200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:215386600-215388400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:215386600-215388800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:215387200-215388600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links