Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11802559	0.83[ASN][1000 genomes]
rs12079267	0.83[ASN][1000 genomes]
rs12403837	0.80[ASN][1000 genomes]
rs55662674	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55913832	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56001365	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56042055	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56152266	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56257399	0.85[ASN][1000 genomes]
rs570147	0.88[EUR][1000 genomes]
rs59259176	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs59365356	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs60526056	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818240	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61818241	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61818243	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61818244	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61818245	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61818249	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61819972	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61819974	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819975	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819978	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215164200-215174800	Weak transcription	NH-A	brain
2	chr1:215164800-215175000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:215167200-215170600	Weak transcription	Osteobl	bone
4	chr1:215167400-215174600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215167800-215169000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:215168000-215174800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:215168400-215169000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:215168600-215169200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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