Variant report

Variant	rs61819974
Chromosome Location	chr1:215169703-215169704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11802559	0.83[ASN][1000 genomes]
rs12079267	0.83[ASN][1000 genomes]
rs12403837	0.80[ASN][1000 genomes]
rs55662674	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55913832	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56001365	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56042055	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56152266	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56257399	0.85[ASN][1000 genomes]
rs570147	0.83[EUR][1000 genomes]
rs59259176	0.80[ASN][1000 genomes]
rs59365356	0.80[ASN][1000 genomes]
rs60526056	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818243	0.83[EUR][1000 genomes]
rs61819972	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61819973	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819975	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819978	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215164200-215174800	Weak transcription	NH-A	brain
2	chr1:215164800-215175000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:215167200-215170600	Weak transcription	Osteobl	bone
4	chr1:215167400-215174600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215168000-215174800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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