Variant report

Variant	rs61819975
Chromosome Location	chr1:215171791-215171792
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11802559	0.83[ASN][1000 genomes]
rs12061587	1.00[AMR][1000 genomes]
rs12069528	1.00[AMR][1000 genomes]
rs12079267	0.83[ASN][1000 genomes]
rs12403837	0.80[ASN][1000 genomes]
rs55651080	1.00[AMR][1000 genomes]
rs55662674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55913832	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55922125	1.00[AMR][1000 genomes]
rs56001365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56036238	1.00[AMR][1000 genomes]
rs56042055	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56152266	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56257399	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56274886	1.00[AMR][1000 genomes]
rs570147	0.94[EUR][1000 genomes]
rs59259176	0.80[ASN][1000 genomes]
rs59365356	0.80[ASN][1000 genomes]
rs60526056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818240	0.87[EUR][1000 genomes]
rs61818241	0.87[EUR][1000 genomes]
rs61818243	0.81[EUR][1000 genomes]
rs61818244	0.87[EUR][1000 genomes]
rs61818245	0.87[EUR][1000 genomes]
rs61818249	0.87[EUR][1000 genomes]
rs61818261	1.00[AMR][1000 genomes]
rs61818265	1.00[AMR][1000 genomes]
rs61818266	1.00[AMR][1000 genomes]
rs61818268	1.00[AMR][1000 genomes]
rs61818271	1.00[AMR][1000 genomes]
rs61818272	1.00[AMR][1000 genomes]
rs61818276	1.00[AMR][1000 genomes]
rs61818277	1.00[AMR][1000 genomes]
rs61818278	1.00[AMR][1000 genomes]
rs61818279	1.00[AMR][1000 genomes]
rs61818290	1.00[AMR][1000 genomes]
rs61818293	1.00[AMR][1000 genomes]
rs61818294	1.00[AMR][1000 genomes]
rs61818295	1.00[AMR][1000 genomes]
rs61818296	1.00[AMR][1000 genomes]
rs61818298	1.00[AMR][1000 genomes]
rs61818301	1.00[AMR][1000 genomes]
rs61818303	1.00[AMR][1000 genomes]
rs61819972	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61819973	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819974	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819978	0.80[ASN][1000 genomes]
rs61819981	1.00[AMR][1000 genomes]
rs61819982	1.00[AMR][1000 genomes]
rs61820009	1.00[AMR][1000 genomes]
rs61820011	1.00[AMR][1000 genomes]
rs61820013	1.00[AMR][1000 genomes]
rs61820015	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215164200-215174800	Weak transcription	NH-A	brain
2	chr1:215164800-215175000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:215167400-215174600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215168000-215174800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:215171200-215172800	Strong transcription	Osteobl	bone

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