Variant report

Variant	rs61819978
Chromosome Location	chr1:215179951-215179952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10429947	0.92[EUR][1000 genomes]
rs12061587	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12069528	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12403837	0.88[ASN][1000 genomes]
rs55651080	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55662674	0.80[ASN][1000 genomes]
rs55913832	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55922125	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56001365	0.85[ASN][1000 genomes]
rs56036238	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56042055	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56152266	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs56257399	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56274886	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59259176	0.88[ASN][1000 genomes]
rs59365356	0.88[ASN][1000 genomes]
rs60526056	0.85[ASN][1000 genomes]
rs61818261	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61818265	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61818266	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61818267	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61818268	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61818271	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61818272	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61818276	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61818277	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61818278	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61818279	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61818290	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61818293	0.92[EUR][1000 genomes]
rs61818294	0.92[EUR][1000 genomes]
rs61818295	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61818296	0.82[EUR][1000 genomes]
rs61819972	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61819973	0.80[ASN][1000 genomes]
rs61819974	0.80[ASN][1000 genomes]
rs61819975	0.80[ASN][1000 genomes]
rs61819980	0.88[ASN][1000 genomes]
rs61819981	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61819982	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61820009	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61820011	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61820013	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61820014	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61820015	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3357779	chr1:215179354-215181902	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3392964	chr1:215179629-215181627	Flanking Active TSS Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215177200-215211200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:215178600-215180000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:215178600-215180000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
4	chr1:215178600-215181000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:215178800-215180600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:215178800-215180800	Active TSS	NHDF-Ad	bronchial
7	chr1:215179200-215180800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:215179200-215182600	Active TSS	Osteobl	bone
9	chr1:215179200-215183800	Weak transcription	NHLF	lung
10	chr1:215179400-215180800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:215179600-215184000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr1:215179800-215180000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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