The 2.0 version of rSNPBase

Variant report

Variant rs61823583
Chromosome Location chr1:224010638-224010639
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:223960200-224025400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr1:223988200-224012000 Weak transcription Colon Smooth Muscle Colon
3 chr1:223991200-224010800 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr1:223999800-224010800 Weak transcription Pancreatic Islets Pancreatic Islet
5 chr1:224001800-224010800 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr1:224002000-224015000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:224002000-224023800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr1:224002200-224013000 Weak transcription H9 Cell Line embryonic stem cell
9 chr1:224002200-224020200 Weak transcription Placenta Placenta
10 chr1:224002200-224020200 Weak transcription Rectal Smooth Muscle rectum
11 chr1:224002400-224010800 Weak transcription Small Intestine intestine
12 chr1:224002400-224013600 Weak transcription Esophagus oesophagus
13 chr1:224003400-224013200 Weak transcription HepG2 liver
14 chr1:224003800-224013600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:224003800-224014800 Weak transcription Placenta Amnion Placenta Amnion
16 chr1:224004000-224010800 Weak transcription Stomach Mucosa stomach
17 chr1:224004000-224012000 Weak transcription Right Ventricle heart
18 chr1:224004200-224014800 Weak transcription HMEC breast
19 chr1:224004800-224010800 Weak transcription Gastric stomach
20 chr1:224007000-224024000 Weak transcription Fetal Intestine Small intestine
21 chr1:224007400-224015200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
22 chr1:224007800-224013400 Weak transcription Ovary ovary
23 chr1:224007800-224020200 Weak transcription Stomach Smooth Muscle stomach
24 chr1:224008000-224017000 Weak transcription Fetal Kidney kidney
25 chr1:224008000-224019800 Weak transcription Brain Germinal Matrix brain
26 chr1:224008200-224019400 Weak transcription Hela-S3 cervix
27 chr1:224008400-224011600 Enhancers HUES6 Cell Line embryonic stem cell
28 chr1:224008400-224011800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr1:224008600-224010800 Weak transcription Primary T killer memory cells from peripheral blood blood
30 chr1:224008600-224011000 Enhancers Muscle Satellite Cultured Cells --
31 chr1:224008600-224012400 Weak transcription Fetal Lung lung
32 chr1:224008600-224013400 Weak transcription Adipose Nuclei Adipose
33 chr1:224008600-224015000 Weak transcription ES-WA7 Cell Line embryonic stem cell
34 chr1:224008600-224019400 Weak transcription A549 lung
35 chr1:224008800-224012600 Weak transcription ES-I3 Cell Line embryonic stem cell
36 chr1:224008800-224013600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:224008800-224020200 Weak transcription Fetal Muscle Trunk muscle
38 chr1:224009000-224010800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
39 chr1:224009000-224010800 Weak transcription Fetal Brain Female brain
40 chr1:224009000-224010800 Weak transcription Fetal Intestine Large intestine
41 chr1:224009000-224010800 Weak transcription Pancreas Pancrea
42 chr1:224009000-224010800 Weak transcription Spleen Spleen
43 chr1:224009000-224010800 Weak transcription NH-A brain
44 chr1:224009000-224012800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
45 chr1:224009000-224013000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
46 chr1:224009000-224013000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
47 chr1:224009000-224013000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr1:224009000-224013400 Weak transcription Duodenum Mucosa Duodenum
49 chr1:224009000-224013400 Weak transcription Fetal Adrenal Gland Adrenal Gland
50 chr1:224009000-224014800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015