The 2.0 version of rSNPBase

Variant report

Variant rs61825352
Chromosome Location chr1:170019294-170019295
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169952400-170043000 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr1:169968800-170020200 Weak transcription Brain Angular Gyrus brain
3 chr1:169982400-170020600 Weak transcription Rectal Smooth Muscle rectum
4 chr1:169984600-170020800 Weak transcription Gastric stomach
5 chr1:169984800-170027600 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr1:169985200-170020400 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr1:169986400-170019800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr1:169989600-170019800 Weak transcription Right Ventricle heart
9 chr1:169993600-170021400 Weak transcription Fetal Brain Male brain
10 chr1:169999800-170036600 Weak transcription Small Intestine intestine
11 chr1:170002800-170036400 Weak transcription NHDF-Ad bronchial
12 chr1:170003600-170027600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
13 chr1:170005000-170020200 Weak transcription Monocytes-CD14+_RO01746 blood
14 chr1:170005200-170025200 Weak transcription Brain Substantia Nigra brain
15 chr1:170005600-170019400 Weak transcription Primary hematopoietic stem cells short term culture blood
16 chr1:170007000-170026200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr1:170007600-170031800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr1:170008200-170032200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr1:170008600-170020400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr1:170008800-170031800 Weak transcription Placenta Amnion Placenta Amnion
21 chr1:170009600-170019600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr1:170009600-170019800 Weak transcription Skeletal Muscle Male skeletal muscle
23 chr1:170010600-170019400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr1:170012200-170027000 Weak transcription Pancreatic Islets Pancreatic Islet
25 chr1:170014000-170025600 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr1:170014000-170032200 Weak transcription Left Ventricle heart
27 chr1:170014600-170025200 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr1:170014600-170031400 Weak transcription GM12878-XiMat blood
29 chr1:170016000-170020200 Weak transcription Brain Inferior Temporal Lobe brain
30 chr1:170016000-170031000 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr1:170016000-170031400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:170016400-170025800 Weak transcription Primary B cells from cord blood blood
33 chr1:170017200-170025600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:170017400-170019400 Strong transcription Primary T cells fromperipheralblood blood
35 chr1:170018000-170019400 Enhancers Fetal Heart heart
36 chr1:170018000-170019600 Strong transcription Primary T cells from cord blood blood
37 chr1:170018200-170019600 Strong transcription Fetal Intestine Large intestine
38 chr1:170018200-170025400 Weak transcription Brain Hippocampus Middle brain
39 chr1:170018200-170026200 Weak transcription Esophagus oesophagus
40 chr1:170018200-170042400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr1:170018400-170020200 Weak transcription Pancreas Pancrea
42 chr1:170018600-170019600 Strong transcription Primary hematopoietic stem cells blood
43 chr1:170018600-170035800 Weak transcription Liver Liver
44 chr1:170018800-170020400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr1:170018800-170020400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
46 chr1:170018800-170020600 Weak transcription Fetal Stomach stomach
47 chr1:170018800-170020800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr1:170018800-170022000 Weak transcription Duodenum Mucosa Duodenum
49 chr1:170018800-170022400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr1:170018800-170023000 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015