Variant report

Variant	rs61829376
Chromosome Location	chr10:4174711-4174712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3826628..3829205-chr10:4172781..4176385,4	MCF-7	breast:
2	chr10:4173609..4176501-chr10:4189443..4191688,2	MCF-7	breast:
3	chr10:3825013..3827072-chr10:4173983..4175763,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12259410	0.83[ASN][1000 genomes]
rs6601817	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3407901	chr10:4172452-4176750	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4169400-4175200	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:4171400-4174800	Enhancers	Hela-S3	cervix
3	chr10:4171800-4174800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:4172000-4175000	Enhancers	Osteobl	bone
5	chr10:4172200-4175200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:4172200-4175200	Enhancers	Fetal Thymus	thymus
7	chr10:4172600-4174800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr10:4172600-4175200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:4172800-4174800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:4172800-4175200	Enhancers	Small Intestine	intestine
11	chr10:4172800-4175200	Enhancers	HSMM	muscle
12	chr10:4173000-4174800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:4173000-4175000	Enhancers	NHEK	skin
14	chr10:4173200-4174800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:4173800-4174800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr10:4173800-4174800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr10:4173800-4174800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:4173800-4174800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:4173800-4174800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:4173800-4175000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:4173800-4175200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr10:4173800-4175200	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr10:4173800-4175400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr10:4174000-4174800	Enhancers	Primary T cells from cord blood	blood
25	chr10:4174000-4174800	Enhancers	Primary hematopoietic stem cells	blood
26	chr10:4174000-4174800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr10:4174000-4174800	Enhancers	Fetal Muscle Leg	muscle
28	chr10:4174000-4175000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr10:4174000-4175200	Enhancers	Primary T cells fromperipheralblood	blood
30	chr10:4174000-4175200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:4174200-4174800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:4174200-4174800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr10:4174200-4174800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:4174200-4174800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:4174200-4174800	Enhancers	Esophagus	oesophagus
36	chr10:4174200-4174800	Bivalent Enhancer	Fetal Kidney	kidney
37	chr10:4174200-4174800	Enhancers	Left Ventricle	heart
38	chr10:4174200-4174800	Enhancers	Placenta Amnion	Placenta Amnion
39	chr10:4174200-4174800	Enhancers	Right Atrium	heart
40	chr10:4174200-4174800	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr10:4174200-4174800	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr10:4174200-4174800	Enhancers	Spleen	Spleen
43	chr10:4174200-4174800	Flanking Active TSS	NHDF-Ad	bronchial
44	chr10:4174200-4175000	Enhancers	HMEC	breast
45	chr10:4174200-4175200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr10:4174200-4175200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:4174200-4175200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr10:4174200-4175200	Enhancers	Lung	lung
49	chr10:4174400-4174800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:4174400-4174800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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