Variant report

Variant	rs61831361
Chromosome Location	chr1:194014440-194014441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11801619	1.00[ASN][1000 genomes]
rs11802752	1.00[ASN][1000 genomes]
rs11802890	1.00[ASN][1000 genomes]
rs11803098	1.00[ASN][1000 genomes]
rs11803315	1.00[ASN][1000 genomes]
rs11806654	1.00[ASN][1000 genomes]
rs17549979	1.00[ASN][1000 genomes]
rs1966754	1.00[ASN][1000 genomes]
rs58213017	1.00[ASN][1000 genomes]
rs61831360	1.00[ASN][1000 genomes]
rs61831363	1.00[ASN][1000 genomes]
rs61831386	1.00[ASN][1000 genomes]
rs61833037	1.00[ASN][1000 genomes]
rs73064721	1.00[ASN][1000 genomes]
rs73064723	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv872835	chr1:194014041-194051568	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194010200-194020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:194013000-194014600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:194013000-194015200	Enhancers	NHEK	skin
4	chr1:194013200-194016600	Enhancers	Hela-S3	cervix
5	chr1:194013800-194015000	Enhancers	A549	lung
6	chr1:194014200-194015200	Enhancers	HUVEC	blood vessel
7	chr1:194014400-194020200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:194014400-194020800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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