Variant report

Variant	rs61831363
Chromosome Location	chr1:194021449-194021450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11801619	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802752	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802890	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11803098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11803315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11806654	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442425	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17549979	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550508	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17615756	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17615792	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1966754	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58213017	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831360	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831361	1.00[ASN][1000 genomes]
rs61831386	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831392	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61831393	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61831422	0.85[EUR][1000 genomes]
rs61833037	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61833038	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73064721	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73064723	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73064752	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv872835	chr1:194014041-194051568	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194020200-194021600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr1:194020400-194030800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr1:194020600-194021800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr1:194020800-194021600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr1:194020800-194030800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr1:194021000-194021800	Enhancers	Primary T cells from cord blood	blood
7	chr1:194021000-194022400	Enhancers	Thymus	Thymus
8	chr1:194021000-194023600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr1:194021200-194021600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:194021200-194022400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr1:194021200-194022400	Enhancers	Fetal Thymus	thymus
12	chr1:194021200-194024800	Weak transcription	Small Intestine	intestine
13	chr1:194021200-194027600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:194021400-194021600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr1:194021400-194022200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr1:194021400-194022400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr1:194021400-194022400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:194021400-194022400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:194021400-194022400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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