Variant report

Variant	rs61833038
Chromosome Location	chr1:194002517-194002518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11801619	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11802752	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11802890	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11803098	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11803315	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11806654	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1442425	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17549979	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17550508	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17615756	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17615792	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1966754	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58213017	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61831360	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61831363	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61831386	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61831392	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61831393	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61833037	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73064721	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73064723	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194002000-194003200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links