Variant report

Variant	rs61841203
Chromosome Location	chr10:49766601-49766602
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:49766484-49767687	U87	brain:	n/a	n/a
2	POLR2A	chr10:49766415-49767730	U87	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49765600..49767473-chr10:49859240..49861901,2	K562	blood:

Variant related genes	Relation type
ARHGAP22	TF binding region
ENSG00000128805	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11592077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11594078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1345107	0.85[EUR][1000 genomes]
rs1965169	0.85[EUR][1000 genomes]
rs2377517	0.85[EUR][1000 genomes]
rs61838376	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61838387	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61841202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7079932	0.81[EUR][1000 genomes]
rs935286	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49742600-49774800	Weak transcription	Aorta	Aorta
2	chr10:49751200-49771600	Weak transcription	Pancreas	Pancrea
3	chr10:49757400-49782200	Weak transcription	HSMMtube	muscle
4	chr10:49759200-49770400	Weak transcription	NH-A	brain
5	chr10:49760800-49768800	Weak transcription	Ovary	ovary
6	chr10:49761600-49780600	Weak transcription	HUVEC	blood vessel
7	chr10:49762600-49772600	Weak transcription	Brain Angular Gyrus	brain
8	chr10:49763200-49780800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:49763800-49772600	Weak transcription	Brain Substantia Nigra	brain
10	chr10:49764400-49777800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:49765000-49773400	Weak transcription	NHLF	lung
12	chr10:49765000-49776400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:49765400-49767400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:49765400-49767400	Weak transcription	HSMM	muscle
15	chr10:49765400-49768400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:49765400-49774000	Weak transcription	NHDF-Ad	bronchial
17	chr10:49765800-49768200	Weak transcription	HMEC	breast
18	chr10:49766000-49767600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:49766000-49776800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:49766200-49766800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:49766200-49772600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:49766400-49767400	Strong transcription	Osteobl	bone
23	chr10:49766600-49767600	Strong transcription	Muscle Satellite Cultured Cells	--

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