Variant report

Variant	rs61846616
Chromosome Location	chr10:50746205-50746206
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50737860..50742863-chr10:50744224..50749108,7	MCF-7	breast:
2	chr10:50733015..50734544-chr10:50744395..50746528,2	MCF-7	breast:
3	chr10:50745695..50748127-chr17:56707618..56709652,2	MCF-7	breast:
4	chr10:50726159..50727907-chr10:50745055..50747037,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225830	Chromatin interaction
ENSG00000212195	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1130028	0.95[EUR][1000 genomes]
rs11812473	0.93[EUR][1000 genomes]
rs11815156	0.89[EUR][1000 genomes]
rs11819019	0.95[EUR][1000 genomes]
rs17010079	0.93[EUR][1000 genomes]
rs17719092	0.90[EUR][1000 genomes]
rs17775180	0.96[EUR][1000 genomes]
rs2228526	0.96[EUR][1000 genomes]
rs2228527	0.95[EUR][1000 genomes]
rs2228529	0.95[EUR][1000 genomes]
rs36079558	0.92[EUR][1000 genomes]
rs4253011	0.98[EUR][1000 genomes]
rs4253028	0.98[EUR][1000 genomes]
rs4253042	0.98[EUR][1000 genomes]
rs4253049	0.98[EUR][1000 genomes]
rs4253055	0.98[EUR][1000 genomes]
rs4253101	0.95[EUR][1000 genomes]
rs4253106	0.96[EUR][1000 genomes]
rs4253121	0.96[EUR][1000 genomes]
rs4253165	0.96[EUR][1000 genomes]
rs4253166	0.96[EUR][1000 genomes]
rs4253193	0.96[EUR][1000 genomes]
rs56164647	0.95[EUR][1000 genomes]
rs58002245	0.96[EUR][1000 genomes]
rs58711755	0.98[EUR][1000 genomes]
rs58912975	0.92[EUR][1000 genomes]
rs59898389	0.98[EUR][1000 genomes]
rs61846612	0.98[EUR][1000 genomes]
rs61846615	0.98[EUR][1000 genomes]
rs61846617	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61846618	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61846620	0.92[EUR][1000 genomes]
rs61846637	0.90[EUR][1000 genomes]
rs61850971	0.92[EUR][1000 genomes]
rs61850976	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073830	0.96[EUR][1000 genomes]
rs7079192	0.88[EUR][1000 genomes]
rs7093098	0.98[EUR][1000 genomes]
rs7097122	0.90[EUR][1000 genomes]
rs7097866	0.92[EUR][1000 genomes]
rs7909222	0.90[EUR][1000 genomes]
rs7920256	0.96[EUR][1000 genomes]
rs8178985	1.00[ASN][1000 genomes]
rs971667	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50730000-50746400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:50743600-50746400	Weak transcription	Aorta	Aorta
3	chr10:50745000-50748000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:50745600-50746400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr10:50745600-50746600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:50745600-50746600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:50745600-50746600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:50745600-50746600	Flanking Active TSS	Duodenum Mucosa	Duodenum
9	chr10:50745600-50746600	Flanking Active TSS	Hela-S3	cervix
10	chr10:50745600-50746600	Flanking Active TSS	HUVEC	blood vessel
11	chr10:50745600-50746600	Flanking Active TSS	NHEK	skin
12	chr10:50745800-50746400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:50745800-50746400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:50745800-50746600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:50745800-50746600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:50745800-50746600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr10:50745800-50746600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
18	chr10:50745800-50746600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:50745800-50746600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
20	chr10:50745800-50746600	Flanking Active TSS	Spleen	Spleen
21	chr10:50745800-50746600	Flanking Active TSS	HMEC	breast
22	chr10:50745800-50746600	Flanking Active TSS	Osteobl	bone
23	chr10:50745800-50747400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:50746000-50746400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:50746000-50746400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:50746000-50746400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:50746000-50746400	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr10:50746000-50746400	Flanking Active TSS	Brain Hippocampus Middle	brain
29	chr10:50746000-50746400	Flanking Active TSS	Colon Smooth Muscle	Colon
30	chr10:50746000-50746400	Flanking Active TSS	Fetal Intestine Small	intestine
31	chr10:50746000-50746400	Flanking Active TSS	Ovary	ovary
32	chr10:50746000-50746400	Flanking Active TSS	Placenta Amnion	Placenta Amnion
33	chr10:50746000-50746400	Enhancers	Small Intestine	intestine
34	chr10:50746000-50746400	Flanking Active TSS	HepG2	liver
35	chr10:50746000-50746600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:50746000-50746600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr10:50746000-50746600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr10:50746000-50746600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr10:50746000-50746600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:50746000-50746600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr10:50746000-50746600	Flanking Active TSS	Liver	Liver
42	chr10:50746000-50746600	Flanking Active TSS	Brain Angular Gyrus	brain
43	chr10:50746000-50746600	Flanking Active TSS	Brain Cingulate Gyrus	brain
44	chr10:50746000-50746600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:50746000-50746600	Flanking Active TSS	Colonic Mucosa	Colon
46	chr10:50746000-50746600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr10:50746000-50746600	Flanking Active TSS	Fetal Brain Male	brain
48	chr10:50746000-50746600	Flanking Active TSS	Fetal Brain Female	brain
49	chr10:50746000-50746600	Flanking Active TSS	Fetal Lung	lung
50	chr10:50746000-50746600	Flanking Active TSS	Fetal Stomach	stomach

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