Variant report

Variant	rs61846620
Chromosome Location	chr10:50764081-50764082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50747393..50749498-chr10:50763066..50765045,2	MCF-7	breast:
2	chr10:50756033..50757654-chr10:50761828..50764703,2	K562	blood:

Variant related genes	Relation type
ENSG00000258838	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1130028	0.89[EUR][1000 genomes]
rs11812473	0.87[EUR][1000 genomes]
rs11815156	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11819019	0.89[EUR][1000 genomes]
rs17010079	0.87[EUR][1000 genomes]
rs17719092	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17775180	0.90[EUR][1000 genomes]
rs2228526	0.90[EUR][1000 genomes]
rs2228527	0.90[EUR][1000 genomes]
rs2228529	0.89[EUR][1000 genomes]
rs36079558	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4253011	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4253028	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4253042	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4253049	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4253055	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4253101	0.90[EUR][1000 genomes]
rs4253106	0.90[EUR][1000 genomes]
rs4253121	0.90[EUR][1000 genomes]
rs4253165	0.90[EUR][1000 genomes]
rs4253166	0.90[EUR][1000 genomes]
rs4253193	0.90[EUR][1000 genomes]
rs56164647	0.89[EUR][1000 genomes]
rs58002245	0.90[EUR][1000 genomes]
rs58711755	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58912975	0.87[EUR][1000 genomes]
rs59898389	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61846612	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61846615	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61846616	0.92[EUR][1000 genomes]
rs61846617	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61846618	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61846637	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61850971	0.87[EUR][1000 genomes]
rs61850976	0.88[EUR][1000 genomes]
rs7073830	0.90[EUR][1000 genomes]
rs7079192	0.82[EUR][1000 genomes]
rs7093098	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097122	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7097866	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909222	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7920256	0.90[EUR][1000 genomes]
rs971667	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50760400-50765600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:50760600-50767400	Weak transcription	HSMMtube	muscle
3	chr10:50761000-50764600	Weak transcription	NHDF-Ad	bronchial
4	chr10:50761400-50764400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:50761400-50764400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:50761600-50765200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:50761600-50770400	Weak transcription	HSMM	muscle
8	chr10:50761800-50764600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:50761800-50764600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:50762000-50764400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:50762000-50764400	Weak transcription	Osteobl	bone
12	chr10:50762400-50764600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:50763400-50764600	Weak transcription	HMEC	breast
14	chr10:50763400-50768400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:50763400-50771000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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